Atomistry » Magnesium » PDB 7adv-7aop » 7af8
Atomistry »
  Magnesium »
    PDB 7adv-7aop »
      7af8 »

Magnesium in PDB 7af8: Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)

Other elements in 7af8:

The structure of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 51;

Binding sites:

The binding sites of Magnesium atom in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) (pdb code 7af8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 51 binding sites of Magnesium where determined in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain), PDB code: 7af8:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 1 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1601

b:55.6
occ:1.00
OP1 1:G1048 3.8 63.6 1.0
O N:ALA2 4.0 60.8 1.0
OP1 1:A1204 4.2 60.1 1.0
OP2 1:A1204 4.3 60.1 1.0
OP2 1:G1048 4.3 63.6 1.0
OE1 N:GLN4 4.4 61.5 1.0
P 1:G1048 4.6 63.6 1.0
OP1 1:U1049 4.6 62.1 1.0
P 1:A1204 4.7 60.1 1.0
C N:ALA2 4.9 60.8 1.0

Magnesium binding site 2 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 2 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1602

b:66.0
occ:1.00
O6 1:G1050 2.4 64.2 1.0
C6 1:G1050 3.6 64.2 1.0
N4 1:C1208 4.1 70.3 1.0
N7 1:G1050 4.2 64.2 1.0
C5 1:G1050 4.3 64.2 1.0
N4 1:C1051 4.4 66.0 1.0
O6 1:G1048 4.5 63.6 1.0
O6 1:2MG1207 4.5 68.6 1.0
C6 1:G1048 4.6 63.6 1.0
N1 1:G1050 4.7 64.2 1.0
C5 1:G1048 4.9 63.6 1.0

Magnesium binding site 3 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 3 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1603

b:88.8
occ:1.00
O6 1:G1143 4.5 95.4 1.0
OP2 1:U1126 4.7 72.8 1.0
O6 1:G1144 4.8 88.0 1.0

Magnesium binding site 4 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 4 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1604

b:93.0
occ:1.00
OP1 1:G993 2.0 77.0 1.0
OP2 1:G1041 2.2 117.9 1.0
P 1:G993 3.5 77.0 1.0
P 1:G1041 3.5 117.9 1.0
O5' 1:G1041 3.8 117.9 1.0
O5' 1:G993 4.2 77.0 1.0
C8 1:G1041 4.3 117.9 1.0
OP2 1:G993 4.3 77.0 1.0
N7 1:G1041 4.3 117.9 1.0
O3' 1:U992 4.4 82.6 1.0
C3' 1:U992 4.4 82.6 1.0
OP1 1:G1041 4.5 117.9 1.0
C3' 1:U1040 4.6 126.3 1.0
O3' 1:U1040 4.6 126.3 1.0
O5' 1:U1040 5.0 126.3 1.0

Magnesium binding site 5 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 5 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1605

b:78.4
occ:1.00
N7 1:G1266 3.7 76.9 1.0
OP1 1:G1268 4.1 73.2 1.0
O6 1:G1266 4.1 76.9 1.0
C5 1:G1266 4.4 76.9 1.0
C6 1:G1266 4.6 76.9 1.0
C8 1:G1266 4.6 76.9 1.0
OP2 1:G1268 4.6 73.2 1.0
P 1:G1268 4.9 73.2 1.0

Magnesium binding site 6 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 6 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1606

b:51.2
occ:1.00
O N:GLN60 4.0 53.6 1.0
O2 1:C980 4.0 52.2 1.0
O6 1:G1361 4.1 53.8 1.0
O N:SER58 4.2 55.7 1.0
OP1 1:A1360 4.2 53.8 1.0
O3' 1:C1359 4.3 54.8 1.0
N7 1:A1360 4.4 53.8 1.0
N3 1:C980 4.5 52.2 1.0
NH1 N:ARG61 4.5 54.1 1.0
C2 1:C980 4.7 52.2 1.0
CD N:ARG61 4.7 54.1 1.0
N4 1:C979 4.9 52.4 1.0
C8 1:A1360 4.9 53.8 1.0
P 1:A1360 4.9 53.8 1.0

Magnesium binding site 7 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 7 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1607

b:67.5
occ:1.00
O6 1:G1178 2.1 71.0 1.0
C6 1:G1178 3.2 71.0 1.0
OP2 1:A1176 3.7 78.6 1.0
N7 1:G1177 4.0 74.4 1.0
C5 1:G1178 4.0 71.0 1.0
N7 1:G1178 4.1 71.0 1.0
OP2 1:G1177 4.3 74.4 1.0
N1 1:G1178 4.3 71.0 1.0
P 1:A1176 4.6 78.6 1.0
NH1 I:ARG99 4.7 69.0 1.0
O6 1:G1177 4.7 74.4 1.0
C8 1:G1177 4.8 74.4 1.0
OP1 1:A1176 4.8 78.6 1.0
O5' 1:A1176 4.8 78.6 1.0
C5 1:G1177 5.0 74.4 1.0

Magnesium binding site 8 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 8 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1608

b:67.6
occ:1.00
O6 1:G1177 4.1 74.4 1.0
N7 1:G1175 4.1 82.4 1.0
O2' 1:G1181 4.1 72.7 1.0
O6 1:G1182 4.2 75.1 1.0
N7 1:A1176 4.3 78.6 1.0
C8 1:G1175 4.6 82.4 1.0
C5 1:G1175 4.7 82.4 1.0
OP2 1:G1175 4.8 82.4 1.0
N6 1:A1176 4.8 78.6 1.0

Magnesium binding site 9 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 9 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1609

b:63.0
occ:1.00
N2 1:G1279 2.7 72.1 1.0
C2 1:G1279 3.3 72.1 1.0
N1 1:G1279 3.7 72.1 1.0
N3 1:G1279 4.1 72.1 1.0
N7 1:A1254 4.1 65.2 1.0
OP2 1:A1254 4.4 65.2 1.0
N7 1:G1255 4.6 70.8 1.0
NH1 J:ARG45 4.6 64.1 1.0
O6 1:G1255 4.6 70.8 1.0
C8 1:A1254 4.7 65.2 1.0
CD J:ARG45 4.8 64.1 1.0
C6 1:G1279 4.8 72.1 1.0
CZ J:ARG45 4.9 64.1 1.0
CG J:ARG45 5.0 64.1 1.0
C5 1:A1254 5.0 65.2 1.0
NE J:ARG45 5.0 64.1 1.0

Magnesium binding site 10 out of 51 in 7af8

Go back to Magnesium Binding Sites List in 7af8
Magnesium binding site 10 out of 51 in the Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Bacterial 30S Ribosomal Subunit Assembly Complex State E (Head Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Mg1610

b:54.4
occ:1.00
OP1 1:C980 2.1 52.2 1.0
P 1:C980 3.5 52.2 1.0
O3' 1:C979 3.9 52.4 1.0
O6 1:G1220 4.0 56.8 1.0
N7 1:G1220 4.1 56.8 1.0
OP2 1:C980 4.3 52.2 1.0
N7 1:A1219 4.4 61.0 1.0
O6 1:G1221 4.4 54.9 1.0
O5' 1:C980 4.5 52.2 1.0
C5' 1:C980 4.7 52.2 1.0
OP2 1:A1219 4.7 61.0 1.0
C6 1:G1220 4.7 56.8 1.0
C5 1:G1220 4.8 56.8 1.0
C8 1:A1219 4.9 61.0 1.0

Reference:

A.Schedlbauer, I.Iturrioz, B.Ochoa-Lizarralde, T.Diercks, J.P.Lopez-Alonso, J.L.Lavin, T.Kaminishi, R.Capuni, N.Dhimole, E.De Astigarraga, D.Gil-Carton, P.Fucini, S.R.Connell. A Conserved Rrna Switch Is Central to Decoding Site Maturation on the Small Ribosomal Subunit. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 34088665
DOI: 10.1126/SCIADV.ABF7547
Page generated: Wed Oct 2 09:38:34 2024

Last articles

Cl in 5XHN
Cl in 5XHM
Cl in 5XGP
Cl in 5XH7
Cl in 5XH6
Cl in 5XGO
Cl in 5XD5
Cl in 5XGN
Cl in 5XFJ
Cl in 5XFF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy