Magnesium in PDB 7agj: Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus

All present enzymatic activity of Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus:
1.17.4.1;

The structure of Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus, PDB code: 7agj was solved by D.Rehling, E.R.Scaletti, P.Stenmark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	94.04 / 2.70
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	108.584, 108.584, 618.107, 90, 90, 120
R / Rfree (%)	22.1 / 27.2

The binding sites of Magnesium atom in the Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus (pdb code 7agj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus, PDB code: 7agj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1005 b:70.8 occ:1.00 O1G A:ATP1001 2.1 79.9 1.0 O3G A:ATP1002 2.2 109.0 1.0 O1B A:ATP1001 2.2 74.6 1.0 O2A A:ATP1001 2.5 78.7 1.0 O3A A:ATP1002 2.6 109.1 1.0 PG A:ATP1001 2.9 84.5 1.0 O1B A:ATP1002 3.1 113.7 1.0 O3B A:ATP1001 3.1 82.0 1.0 PB A:ATP1001 3.1 79.2 1.0 O3G A:ATP1001 3.2 77.2 1.0 PB A:ATP1002 3.3 109.3 1.0 PG A:ATP1002 3.4 105.6 1.0 O1A A:ATP1002 3.5 106.6 1.0 O3B A:ATP1002 3.6 111.2 1.0 PA A:ATP1001 3.6 75.5 1.0 PA A:ATP1002 3.7 110.0 1.0 O3A A:ATP1001 3.7 78.3 1.0 NZ A:LYS88 3.8 82.2 1.0 O1G A:ATP1002 4.1 105.8 1.0 O5' A:ATP1002 4.2 115.0 1.0 O2G A:ATP1001 4.3 81.1 1.0 O5' A:ATP1001 4.4 75.6 1.0 O2B A:ATP1001 4.5 77.7 1.0 C5' A:ATP1002 4.6 111.9 1.0 NZ A:LYS7 4.6 89.0 1.0 O2G A:ATP1002 4.6 106.3 1.0 CE A:LYS88 4.7 82.1 1.0 O2B A:ATP1002 4.7 106.1 1.0 O1A A:ATP1001 4.8 76.7 1.0 CE A:LYS7 4.9 90.5 1.0 O2A A:ATP1002 4.9 106.0 1.0

Magnesium binding site 2 out of 2 in the Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg904 b:69.7 occ:1.00 O2G B:ATP901 1.9 73.9 1.0 O1B B:ATP901 2.2 70.6 1.0 O2A B:ATP902 2.3 102.6 1.0 O2G B:ATP902 2.4 112.8 1.0 O2A B:ATP901 2.5 76.3 1.0 PG B:ATP901 2.7 77.6 1.0 O1G B:ATP901 2.9 77.0 1.0 O2B B:ATP902 3.0 106.3 1.0 O3B B:ATP901 3.1 76.2 1.0 PB B:ATP901 3.2 77.7 1.0 PA B:ATP902 3.5 105.3 1.0 PG B:ATP902 3.7 110.6 1.0 PA B:ATP901 3.7 74.8 1.0 NZ B:LYS88 3.7 85.6 1.0 O3A B:ATP901 3.8 74.8 1.0 O3A B:ATP902 3.8 109.8 1.0 PB B:ATP902 3.8 108.0 1.0 O5' B:ATP902 3.8 106.7 1.0 O3B B:ATP902 4.0 108.9 1.0 O3G B:ATP902 4.1 111.2 1.0 O3G B:ATP901 4.1 76.7 1.0 CE B:LYS88 4.5 84.1 1.0 O2B B:ATP901 4.5 78.0 1.0 O5' B:ATP901 4.5 76.4 1.0 NZ B:LYS7 4.6 79.4 1.0 O1A B:ATP902 4.8 102.6 1.0 CE B:LYS7 4.8 79.2 1.0 O1A B:ATP901 4.9 75.5 1.0 O1G B:ATP902 4.9 107.1 1.0

D.Rehling, E.R.Scaletti, P.Stenmark. Ribonucleotide Reductase R1 Protein From Aquifex Aeolicus To Be Published.