Magnesium in PDB 7ahn: Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8

The binding sites of Magnesium atom in the Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8 (pdb code 7ahn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8, PDB code: 7ahn:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:20.4 occ:1.00 O2B C:ADP401 1.9 22.9 1.0 O3 C:PO4403 2.2 25.1 1.0 PB C:ADP401 3.3 22.9 1.0 NE2 C:GLN137 3.6 25.2 1.0 P C:PO4403 3.6 25.1 1.0 OD2 C:ASP11 3.7 26.0 1.0 O1B C:ADP401 3.9 22.9 1.0 CD C:GLN137 4.0 25.2 1.0 O3B C:ADP401 4.1 22.9 1.0 O2 C:PO4403 4.1 25.1 1.0 OD1 C:ASP11 4.3 26.0 1.0 OE1 C:GLN137 4.3 25.2 1.0 O3A C:ADP401 4.3 22.9 1.0 O1 C:PO4403 4.4 25.1 1.0 CG C:ASP11 4.4 26.0 1.0 O2A C:ADP401 4.5 22.9 1.0 CA C:GLY13 4.5 23.9 1.0 O4 C:PO4403 4.5 25.1 1.0 OD2 C:ASP154 4.7 24.1 1.0 CG C:GLN137 4.7 25.2 1.0 OD1 C:ASP154 4.7 24.1 1.0 CA C:GLY156 4.7 22.1 1.0 CG2 C:VAL339 4.8 22.3 1.0 NZ C:LYS18 4.9 23.1 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:32.8 occ:1.00 O2B A:ADP401 1.9 31.0 1.0 O3 A:PO4403 2.2 35.3 1.0 PB A:ADP401 3.3 31.0 1.0 NE2 A:GLN137 3.6 37.9 1.0 P A:PO4403 3.6 35.3 1.0 OD2 A:ASP11 3.7 39.0 1.0 O3B A:ADP401 3.9 31.0 1.0 CD A:GLN137 4.0 37.9 1.0 O1B A:ADP401 4.1 31.0 1.0 O2 A:PO4403 4.1 35.3 1.0 OD1 A:ASP11 4.3 39.0 1.0 OE1 A:GLN137 4.3 37.9 1.0 O3A A:ADP401 4.3 31.0 1.0 O1 A:PO4403 4.4 35.3 1.0 CG A:ASP11 4.4 39.0 1.0 O2A A:ADP401 4.5 31.0 1.0 CA A:GLY13 4.5 34.2 1.0 O4 A:PO4403 4.5 35.3 1.0 OD2 A:ASP154 4.7 34.1 1.0 CG A:GLN137 4.7 37.9 1.0 OD1 A:ASP154 4.7 34.1 1.0 CA A:GLY156 4.7 30.5 1.0 CG2 A:VAL339 4.8 35.7 1.0 NZ A:LYS18 4.9 34.0 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:31.4 occ:1.00 O2B E:ADP401 1.9 31.7 1.0 O3 E:PO4403 2.2 34.0 1.0 PB E:ADP401 3.3 31.7 1.0 NE2 E:GLN137 3.6 33.4 1.0 P E:PO4403 3.6 34.0 1.0 OD2 E:ASP11 3.7 38.2 1.0 O1B E:ADP401 3.9 31.7 1.0 CD E:GLN137 4.0 33.4 1.0 O3B E:ADP401 4.1 31.7 1.0 O2 E:PO4403 4.1 34.0 1.0 OD1 E:ASP11 4.3 38.2 1.0 OE1 E:GLN137 4.3 33.4 1.0 O3A E:ADP401 4.3 31.7 1.0 O1 E:PO4403 4.4 34.0 1.0 CG E:ASP11 4.4 38.2 1.0 O2A E:ADP401 4.5 31.7 1.0 CA E:GLY13 4.5 34.4 1.0 O4 E:PO4403 4.5 34.0 1.0 OD2 E:ASP154 4.7 29.7 1.0 CG E:GLN137 4.7 33.4 1.0 OD1 E:ASP154 4.7 29.7 1.0 CA E:GLY156 4.7 29.4 1.0 CG2 E:VAL339 4.8 30.7 1.0 NZ E:LYS18 4.9 35.7 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:25.0 occ:1.00 O2B D:ADP401 1.9 25.7 1.0 O3 D:PO4403 2.2 28.6 1.0 PB D:ADP401 3.3 25.7 1.0 NE2 D:GLN137 3.6 29.1 1.0 P D:PO4403 3.6 28.6 1.0 OD2 D:ASP11 3.7 30.1 1.0 O3B D:ADP401 3.9 25.7 1.0 CD D:GLN137 4.0 29.1 1.0 O1B D:ADP401 4.1 25.7 1.0 O2 D:PO4403 4.1 28.6 1.0 OD1 D:ASP11 4.3 30.1 1.0 OE1 D:GLN137 4.3 29.1 1.0 O3A D:ADP401 4.3 25.7 1.0 O1 D:PO4403 4.4 28.6 1.0 CG D:ASP11 4.4 30.1 1.0 O2A D:ADP401 4.5 25.7 1.0 CA D:GLY13 4.5 28.0 1.0 O4 D:PO4403 4.5 28.6 1.0 OD2 D:ASP154 4.7 26.1 1.0 CG D:GLN137 4.7 29.1 1.0 OD1 D:ASP154 4.7 26.1 1.0 CA D:GLY156 4.7 24.1 1.0 CG2 D:VAL339 4.8 25.7 1.0 NZ D:LYS18 4.9 27.0 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of F-Actin Stabilized By Cis-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:24.7 occ:1.00 O2B B:ADP401 1.9 25.3 1.0 O3 B:PO4403 2.2 27.9 1.0 PB B:ADP401 3.3 25.3 1.0 NE2 B:GLN137 3.6 28.1 1.0 P B:PO4403 3.6 27.9 1.0 OD2 B:ASP11 3.7 29.6 1.0 O3B B:ADP401 3.9 25.3 1.0 CD B:GLN137 4.0 28.1 1.0 O1B B:ADP401 4.1 25.3 1.0 O2 B:PO4403 4.1 27.9 1.0 OD1 B:ASP11 4.3 29.6 1.0 OE1 B:GLN137 4.3 28.1 1.0 O3A B:ADP401 4.3 25.3 1.0 O1 B:PO4403 4.4 27.9 1.0 CG B:ASP11 4.4 29.6 1.0 O2A B:ADP401 4.5 25.3 1.0 CA B:GLY13 4.5 26.4 1.0 O4 B:PO4403 4.5 27.9 1.0 OD2 B:ASP154 4.7 26.4 1.0 CG B:GLN137 4.7 28.1 1.0 OD1 B:ASP154 4.7 26.4 1.0 CA B:GLY156 4.7 24.3 1.0 CG2 B:VAL339 4.8 26.1 1.0 NZ B:LYS18 4.9 25.5 1.0

S.Pospich, F.Kullmer, V.Nasufovic, J.Funk, A.Belyy, P.Bieling, H.D.Arndt, S.Raunser. Cryo-Em Resolves Molecular Recognition of An Optojasp Photoswitch Bound to Actin Filaments in Both Switch States. Angew.Chem.Int.Ed.Engl. 2021.
ISSN: ESSN 1521-3773
PubMed: 33449370
DOI: 10.1002/ANIE.202013193