Magnesium in PDB 7ahq: Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8

The binding sites of Magnesium atom in the Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8 (pdb code 7ahq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8, PDB code: 7ahq:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:61.6 occ:1.00 O3B A:ADP401 1.9 66.7 1.0 PB A:ADP401 3.0 66.7 1.0 O3 A:PO4402 3.1 80.9 1.0 O2B A:ADP401 3.2 66.7 1.0 OE1 A:GLN137 4.0 70.6 1.0 O1B A:ADP401 4.0 66.7 1.0 O A:SER155 4.1 63.1 1.0 O2A A:ADP401 4.1 66.7 1.0 O3A A:ADP401 4.2 66.7 1.0 NE2 A:GLN137 4.3 70.6 1.0 CD A:GLN137 4.3 70.6 1.0 NZ A:LYS18 4.3 64.4 1.0 OD1 A:ASP154 4.5 66.9 1.0 OD2 A:ASP154 4.5 66.9 1.0 P A:PO4402 4.6 80.9 1.0 CG2 A:VAL339 4.7 66.0 1.0 CA A:GLY156 4.7 63.0 1.0 PA A:ADP401 4.7 66.7 1.0 CA A:GLY301 4.9 65.8 1.0 CG A:ASP154 4.9 66.9 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg403 b:45.0 occ:1.00 O3B B:ADP401 1.9 49.9 1.0 PB B:ADP401 3.0 49.9 1.0 O3 B:PO4402 3.1 62.9 1.0 O2B B:ADP401 3.2 49.9 1.0 OE1 B:GLN137 4.0 49.2 1.0 O1B B:ADP401 4.0 49.9 1.0 O B:SER155 4.1 47.0 1.0 O2A B:ADP401 4.1 49.9 1.0 O3A B:ADP401 4.2 49.9 1.0 NE2 B:GLN137 4.3 49.2 1.0 CD B:GLN137 4.3 49.2 1.0 NZ B:LYS18 4.3 44.0 1.0 OD1 B:ASP154 4.5 47.0 1.0 OD2 B:ASP154 4.5 47.0 1.0 P B:PO4402 4.6 62.9 1.0 CG2 B:VAL339 4.7 46.6 1.0 CA B:GLY156 4.7 47.6 1.0 PA B:ADP401 4.7 49.9 1.0 CA B:GLY301 4.9 47.3 1.0 CG B:ASP154 4.9 47.0 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg404 b:42.7 occ:1.00 O3B C:ADP402 1.9 44.4 1.0 PB C:ADP402 3.0 44.4 1.0 O3 C:PO4403 3.1 62.0 1.0 O2B C:ADP402 3.2 44.4 1.0 OE1 C:GLN137 4.0 47.9 1.0 O1B C:ADP402 4.0 44.4 1.0 O C:SER155 4.1 43.2 1.0 O2A C:ADP402 4.1 44.4 1.0 O3A C:ADP402 4.2 44.4 1.0 NE2 C:GLN137 4.3 47.9 1.0 CD C:GLN137 4.3 47.9 1.0 NZ C:LYS18 4.3 37.9 1.0 OD1 C:ASP154 4.5 44.2 1.0 OD2 C:ASP154 4.5 44.2 1.0 P C:PO4403 4.6 62.0 1.0 CG2 C:VAL339 4.7 40.8 1.0 CA C:GLY156 4.7 44.9 1.0 PA C:ADP402 4.7 44.4 1.0 CA C:GLY301 4.9 44.6 1.0 CG C:ASP154 4.9 44.2 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg404 b:43.5 occ:1.00 O3B D:ADP402 1.9 51.4 1.0 PB D:ADP402 3.0 51.4 1.0 O3 D:PO4403 3.1 62.6 1.0 O2B D:ADP402 3.2 51.4 1.0 OE1 D:GLN137 4.0 48.5 1.0 O1B D:ADP402 4.0 51.4 1.0 O D:SER155 4.1 47.9 1.0 O2A D:ADP402 4.1 51.4 1.0 O3A D:ADP402 4.2 51.4 1.0 NE2 D:GLN137 4.3 48.5 1.0 CD D:GLN137 4.3 48.5 1.0 NZ D:LYS18 4.3 48.3 1.0 OD1 D:ASP154 4.5 47.3 1.0 OD2 D:ASP154 4.5 47.3 1.0 P D:PO4403 4.6 62.6 1.0 CG2 D:VAL339 4.7 45.2 1.0 CA D:GLY156 4.7 49.3 1.0 PA D:ADP402 4.7 51.4 1.0 CA D:GLY301 4.9 50.0 1.0 CG D:ASP154 4.9 47.3 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of F-Actin Stabilized By Trans-Optojasp-8 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg404 b:54.8 occ:1.00 O3B E:ADP402 1.9 63.8 1.0 PB E:ADP402 3.0 63.8 1.0 O3 E:PO4403 3.1 71.8 1.0 O2B E:ADP402 3.2 63.8 1.0 OE1 E:GLN137 4.0 61.6 1.0 O1B E:ADP402 4.0 63.8 1.0 O E:SER155 4.1 57.0 1.0 O2A E:ADP402 4.1 63.8 1.0 O3A E:ADP402 4.2 63.8 1.0 NE2 E:GLN137 4.3 61.6 1.0 CD E:GLN137 4.3 61.6 1.0 NZ E:LYS18 4.3 63.6 1.0 OD1 E:ASP154 4.5 57.7 1.0 OD2 E:ASP154 4.5 57.7 1.0 P E:PO4403 4.6 71.8 1.0 CG2 E:VAL339 4.7 60.2 1.0 CA E:GLY156 4.7 59.6 1.0 PA E:ADP402 4.7 63.8 1.0 CA E:GLY301 4.9 60.0 1.0 CG E:ASP154 4.9 57.7 1.0

S.Pospich, F.Kullmer, V.Nasufovic, J.Funk, A.Belyy, P.Bieling, H.D.Arndt, S.Raunser. Cryo-Em Resolves Molecular Recognition of An Optojasp Photoswitch Bound to Actin Filaments in Both Switch States. Angew.Chem.Int.Ed.Engl. 2021.
ISSN: ESSN 1521-3773
PubMed: 33449370
DOI: 10.1002/ANIE.202013193