Magnesium in PDB 7arj: Lolcde in Complex with Lipoprotein and Amppnp Complex Undimerized Form

The binding sites of Magnesium atom in the Lolcde in Complex with Lipoprotein and Amppnp Complex Undimerized Form (pdb code 7arj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lolcde in Complex with Lipoprotein and Amppnp Complex Undimerized Form, PDB code: 7arj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Lolcde in Complex with Lipoprotein and Amppnp Complex Undimerized Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lolcde in Complex with Lipoprotein and Amppnp Complex Undimerized Form within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:139.5 occ:1.00 OD2 F:ASP170 2.6 129.3 1.0 OD1 F:ASP170 2.8 129.3 1.0 CG F:ASP170 3.0 129.3 1.0 CB F:SER49 3.1 140.1 1.0 O1G F:ANP401 3.2 149.9 1.0 O2G F:ANP401 3.7 149.9 1.0 PG F:ANP401 3.7 149.9 1.0 N3B F:ANP401 3.8 149.9 1.0 OG F:SER49 3.9 140.1 1.0 CA F:SER49 3.9 140.1 1.0 N F:SER49 4.4 140.1 1.0 CB F:ASP170 4.5 129.3 1.0

Magnesium binding site 2 out of 2 in the Lolcde in Complex with Lipoprotein and Amppnp Complex Undimerized Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lolcde in Complex with Lipoprotein and Amppnp Complex Undimerized Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:130.8 occ:1.00 O1G D:ANP401 2.7 144.7 1.0 OD2 D:ASP170 2.8 124.9 1.0 CB D:SER49 3.1 133.1 1.0 CA D:SER49 3.4 133.1 1.0 N D:SER49 3.4 133.1 1.0 OD1 D:ASP170 3.4 124.9 1.0 CG D:ASP170 3.4 124.9 1.0 N3B D:ANP401 3.5 144.7 1.0 PG D:ANP401 3.7 144.7 1.0 OG D:SER49 3.8 133.1 1.0 C D:LYS48 4.0 138.4 1.0 CB D:LYS48 4.1 138.4 1.0 O D:LYS48 4.5 138.4 1.0 O2G D:ANP401 4.6 144.7 1.0 CA D:LYS48 4.7 138.4 1.0 CB D:ASP170 4.8 124.9 1.0 CE D:LYS48 4.8 138.4 1.0 C D:SER49 4.9 133.1 1.0 O3G D:ANP401 4.9 144.7 1.0 CD1 D:LEU52 4.9 124.1 1.0 CG1 D:VAL202 5.0 132.1 1.0

X.D.Tang, S.H.Chang, K.Zhang, T.Wang, Q.H.Luo, W.Qiao, C.Wang, Z.B.Zhang, Z.Y.Zhang, X.F.Zhu, C.J.Dong, X.Zhang, H.H.Dong. Structural Basis For Bacterial Lipoprotein Relocation By the Transporter Lolcde Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-021-00573-X