Atomistry » Magnesium » PDB 7aom-7b19 » 7ark
Atomistry »
  Magnesium »
    PDB 7aom-7b19 »
      7ark »

Magnesium in PDB 7ark: Lolcde in Complex with Amp-Pnp in the Closed Nbd State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Lolcde in Complex with Amp-Pnp in the Closed Nbd State (pdb code 7ark). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lolcde in Complex with Amp-Pnp in the Closed Nbd State, PDB code: 7ark:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7ark

Go back to Magnesium Binding Sites List in 7ark
Magnesium binding site 1 out of 2 in the Lolcde in Complex with Amp-Pnp in the Closed Nbd State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lolcde in Complex with Amp-Pnp in the Closed Nbd State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:49.7
occ:1.00
O1G D:ANP401 2.2 61.4 1.0
NE2 D:GLN94 2.3 32.6 1.0
CD D:GLN94 2.9 32.6 1.0
OE1 D:GLN94 3.3 32.6 1.0
OD2 D:ASP170 3.4 38.5 1.0
PG D:ANP401 3.5 61.4 1.0
CG D:GLN94 4.0 32.6 1.0
O3G D:ANP401 4.1 61.4 1.0
CB D:ASP170 4.2 38.5 1.0
CG D:ASP170 4.2 38.5 1.0
N3B D:ANP401 4.2 61.4 1.0
O D:LYS48 4.5 57.8 1.0
CA F:GLY148 4.6 38.9 1.0
O2G D:ANP401 4.7 61.4 1.0
N F:GLY148 5.0 38.9 1.0
CB D:SER49 5.0 55.7 1.0

Magnesium binding site 2 out of 2 in 7ark

Go back to Magnesium Binding Sites List in 7ark
Magnesium binding site 2 out of 2 in the Lolcde in Complex with Amp-Pnp in the Closed Nbd State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lolcde in Complex with Amp-Pnp in the Closed Nbd State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg402

b:39.5
occ:1.00
OD1 F:ASP170 2.2 34.2 1.0
NE2 F:GLN94 2.6 36.2 1.0
CG F:ASP170 3.0 34.2 1.0
OD2 F:ASP170 3.1 34.2 1.0
CD F:GLN94 3.3 36.2 1.0
O1G F:ANP401 3.4 63.4 1.0
CG F:GLN94 3.8 36.2 1.0
OE1 F:GLN94 4.1 36.2 1.0
NZ F:LYS48 4.3 64.0 1.0
O3G F:ANP401 4.3 63.4 1.0
CA D:GLY148 4.4 37.5 1.0
CB F:ASP170 4.4 34.2 1.0
PG F:ANP401 4.5 63.4 1.0
CB F:SER49 4.8 55.1 1.0
CB F:GLN94 5.0 36.2 1.0
N D:GLY148 5.0 37.5 1.0

Reference:

X.D.Tang, S.H.Chang, K.Zhang, T.Wang, Q.H.Luo, W.Qiao, C.Wang, Z.B.Zhang, Z.Y.Zhang, X.F.Zhu, C.J.Dong, X.Zhang, H.H.Dong. Structural Basis For Bacterial Lipoprotein Relocation By the Transporter Lolcde Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-021-00573-X
Page generated: Wed Oct 2 10:12:07 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy