Atomistry » Magnesium » PDB 7aom-7b19 » 7aun
Atomistry »
  Magnesium »
    PDB 7aom-7b19 »
      7aun »

Magnesium in PDB 7aun: Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with Pcp-INSP8

Enzymatic activity of Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with Pcp-INSP8

All present enzymatic activity of Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with Pcp-INSP8:
3.6.1.52; 3.6.1.60;

Protein crystallography data

The structure of Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with Pcp-INSP8, PDB code: 7aun was solved by M.A.Marquez-Monino, B.Gonzalez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.58 / 1.95
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 61.53, 61.53, 95.501, 90, 90, 120
R / Rfree (%) 21.8 / 25.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with Pcp-INSP8 (pdb code 7aun). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with Pcp-INSP8, PDB code: 7aun:

Magnesium binding site 1 out of 1 in 7aun

Go back to Magnesium Binding Sites List in 7aun
Magnesium binding site 1 out of 1 in the Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with Pcp-INSP8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with Pcp-INSP8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:45.1
occ:1.00
O32 A:4WZ201 2.1 63.1 0.5
O32 A:4WZ201 2.1 62.7 0.5
O61 A:4WZ201 2.2 70.6 0.5
O A:LYS63 2.2 42.0 1.0
O61 A:4WZ201 2.2 70.7 0.5
OE1 A:GLU84 2.2 46.4 1.0
O31 A:4WZ201 2.4 69.5 0.5
O31 A:4WZ201 2.5 69.7 0.5
O A:HOH319 2.7 38.6 1.0
CD A:GLU84 3.2 46.1 1.0
C A:LYS63 3.4 41.0 1.0
PA2 A:4WZ201 3.4 63.0 0.5
PA2 A:4WZ201 3.4 63.3 0.5
OE2 A:GLU84 3.5 43.7 1.0
PA1 A:4WZ201 3.6 73.3 0.5
PA1 A:4WZ201 3.6 73.4 0.5
PB1 A:4WZ201 3.6 72.8 0.5
PB1 A:4WZ201 3.7 72.9 0.5
O22 A:4WZ201 3.7 61.9 0.5
O22 A:4WZ201 3.7 62.1 0.5
CA A:GLY64 3.8 41.8 1.0
O A:HOH303 3.8 43.7 1.0
NZ A:LYS63 3.9 46.6 1.0
O11 A:4WZ201 4.0 72.1 0.5
O11 A:4WZ201 4.0 72.1 0.5
N A:GLY64 4.0 40.0 1.0
CB1 A:4WZ201 4.1 72.2 0.5
CB1 A:4WZ201 4.1 72.3 0.5
C2 A:4WZ201 4.2 68.8 0.5
C2 A:4WZ201 4.2 68.8 0.5
O12 A:4WZ201 4.2 65.2 0.5
O12 A:4WZ201 4.3 65.3 0.5
NH2 A:ARG152 4.3 58.0 1.0
OE2 A:GLU80 4.4 55.2 1.0
O51 A:4WZ201 4.4 71.4 0.5
O51 A:4WZ201 4.5 71.4 0.5
O42 A:4WZ201 4.5 63.0 0.5
O42 A:4WZ201 4.5 62.6 0.5
CA A:LYS63 4.5 41.5 1.0
N A:LYS63 4.6 39.6 1.0
CG A:GLU84 4.6 45.2 1.0
O71 A:4WZ201 4.6 71.2 0.5
O71 A:4WZ201 4.6 71.3 0.5
C1 A:4WZ201 4.7 72.5 0.5
C1 A:4WZ201 4.7 72.5 0.5
CG A:LYS63 4.8 45.1 1.0
CD A:GLU80 4.9 50.1 1.0
O21 A:4WZ201 4.9 73.2 0.5
O21 A:4WZ201 5.0 73.3 0.5

Reference:

M.A.Marquez-Monino, R.Ortega-Garcia, M.L.Shipton, E.Franco-Echevarria, A.M.Riley, J.Sanz-Aparicio, B.V.L.Potter, B.Gonzalez. Multiple Substrate Recognition By Yeast Diadenosine and Diphosphoinositol Polyphosphate Phosphohydrolase Through Phosphate Clamping. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 33893105
DOI: 10.1126/SCIADV.ABF6744
Page generated: Wed Oct 2 10:13:50 2024

Last articles

Mg in 7XKW
Mg in 7XMV
Mg in 7XMU
Mg in 7XQX
Mg in 7XQV
Mg in 7XMB
Mg in 7XML
Mg in 7XM0
Mg in 7XMA
Mg in 7XD7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy