Magnesium in PDB 7awt: E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
Other elements in 7awt:
The structure of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
(pdb code 7awt). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm, PDB code: 7awt:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 7awt
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Magnesium Binding Sites List in 7awt
Magnesium binding site 1 out
of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg202
b:30.0
occ:1.00
|
OE1
|
E:GLU70
|
3.3
|
81.3
|
1.0
|
CG2
|
I:VAL175
|
3.6
|
84.5
|
1.0
|
CD2
|
G:TYR173
|
4.0
|
77.7
|
1.0
|
NE2
|
G:GLN138
|
4.2
|
82.9
|
1.0
|
O
|
G:ARG183
|
4.2
|
82.8
|
1.0
|
CG
|
G:TYR173
|
4.3
|
77.7
|
1.0
|
CD
|
E:GLU70
|
4.4
|
81.3
|
1.0
|
O
|
G:PRO184
|
4.4
|
83.0
|
1.0
|
CE2
|
G:TYR173
|
4.4
|
77.7
|
1.0
|
CB
|
G:TYR173
|
4.6
|
77.7
|
1.0
|
CD1
|
G:TYR180
|
4.7
|
75.4
|
1.0
|
C
|
G:PRO184
|
4.8
|
83.0
|
1.0
|
CE1
|
G:TYR180
|
4.8
|
75.4
|
1.0
|
CA
|
G:PRO184
|
4.8
|
83.0
|
1.0
|
CD
|
I:LYS176
|
4.9
|
87.8
|
1.0
|
OE2
|
E:GLU70
|
5.0
|
81.3
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 7awt
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Magnesium Binding Sites List in 7awt
Magnesium binding site 2 out
of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg503
b:30.0
occ:1.00
|
CB
|
F:ALA205
|
3.0
|
93.3
|
1.0
|
N
|
F:ALA205
|
3.4
|
93.3
|
1.0
|
CA
|
F:ALA205
|
3.5
|
93.3
|
1.0
|
SG
|
F:CYS215
|
3.5
|
90.0
|
1.0
|
O
|
F:THR214
|
3.5
|
88.0
|
1.0
|
O
|
F:LYS72
|
3.9
|
93.7
|
1.0
|
CA
|
F:CYS215
|
4.0
|
90.0
|
1.0
|
NZ
|
F:LYS72
|
4.1
|
93.7
|
1.0
|
CG
|
F:LYS72
|
4.2
|
93.7
|
1.0
|
CB
|
F:CYS215
|
4.2
|
90.0
|
1.0
|
C
|
F:PRO204
|
4.2
|
89.4
|
1.0
|
C
|
F:THR214
|
4.5
|
88.0
|
1.0
|
CB
|
F:PRO204
|
4.5
|
89.4
|
1.0
|
N
|
F:CYS215
|
4.7
|
90.0
|
1.0
|
C
|
F:LYS72
|
4.7
|
93.7
|
1.0
|
CD1
|
F:LEU75
|
4.8
|
97.3
|
1.0
|
CD
|
F:PRO204
|
4.9
|
89.4
|
1.0
|
O
|
F:PRO204
|
4.9
|
89.4
|
1.0
|
CA
|
F:PRO204
|
4.9
|
89.4
|
1.0
|
CD
|
F:LYS72
|
4.9
|
93.7
|
1.0
|
C
|
F:ALA205
|
4.9
|
93.3
|
1.0
|
N
|
F:PRO204
|
4.9
|
89.4
|
1.0
|
N
|
F:VAL216
|
4.9
|
85.6
|
1.0
|
CA
|
F:LYS72
|
5.0
|
93.7
|
1.0
|
O
|
F:HOH622
|
5.0
|
30.0
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 7awt
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Magnesium Binding Sites List in 7awt
Magnesium binding site 3 out
of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1005
b:30.0
occ:1.00
|
OD2
|
G:ASP617
|
2.0
|
84.6
|
1.0
|
OD2
|
G:ASP731
|
2.1
|
88.6
|
1.0
|
OE1
|
G:GLN632
|
2.5
|
83.0
|
1.0
|
OE2
|
G:GLU647
|
2.5
|
85.3
|
1.0
|
CG
|
G:ASP731
|
3.1
|
88.6
|
1.0
|
CG
|
G:ASP617
|
3.3
|
84.6
|
1.0
|
CB
|
G:ASP731
|
3.4
|
88.6
|
1.0
|
CD
|
G:GLN632
|
3.7
|
83.0
|
1.0
|
CD
|
G:GLU647
|
3.8
|
85.3
|
1.0
|
OD1
|
G:ASP729
|
3.8
|
89.1
|
1.0
|
OD1
|
G:ASP617
|
4.0
|
84.6
|
1.0
|
NH1
|
G:ARG650
|
4.1
|
87.1
|
1.0
|
OD1
|
G:ASP731
|
4.2
|
88.6
|
1.0
|
CB
|
G:GLN632
|
4.2
|
83.0
|
1.0
|
CB
|
G:ASP617
|
4.3
|
84.6
|
1.0
|
OE1
|
G:GLU647
|
4.5
|
85.3
|
1.0
|
CG
|
G:GLN632
|
4.6
|
83.0
|
1.0
|
NE2
|
G:GLN632
|
4.7
|
83.0
|
1.0
|
CG
|
G:GLU647
|
4.7
|
85.3
|
1.0
|
CA
|
G:ASP731
|
4.8
|
88.6
|
1.0
|
N
|
G:ASP617
|
4.9
|
84.6
|
1.0
|
CG
|
G:ASP729
|
4.9
|
89.1
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 7awt
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Magnesium Binding Sites List in 7awt
Magnesium binding site 4 out
of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1006
b:30.0
occ:1.00
|
N
|
G:ASN137
|
3.8
|
82.0
|
1.0
|
CG
|
I:LYS163
|
4.3
|
91.0
|
1.0
|
ND2
|
G:ASN137
|
4.3
|
82.0
|
1.0
|
MG
|
G:MG1009
|
4.3
|
30.0
|
1.0
|
NH1
|
G:ARG136
|
4.3
|
83.2
|
1.0
|
CA
|
G:ARG136
|
4.4
|
83.2
|
1.0
|
CB
|
G:ARG136
|
4.4
|
83.2
|
1.0
|
CE
|
I:LYS163
|
4.4
|
91.0
|
1.0
|
CB
|
G:ASN137
|
4.5
|
82.0
|
1.0
|
CG
|
G:ASN137
|
4.5
|
82.0
|
1.0
|
C
|
G:ARG136
|
4.6
|
83.2
|
1.0
|
CA
|
G:ASN137
|
4.6
|
82.0
|
1.0
|
O
|
G:ASN137
|
4.7
|
82.0
|
1.0
|
CG
|
G:ARG136
|
4.8
|
83.2
|
1.0
|
CD
|
G:ARG136
|
4.9
|
83.2
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 7awt
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Magnesium Binding Sites List in 7awt
Magnesium binding site 5 out
of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1007
b:30.0
occ:1.00
|
CB
|
G:ASP17
|
3.7
|
89.9
|
1.0
|
OD2
|
G:ASP412
|
3.9
|
89.5
|
1.0
|
OE2
|
G:GLU21
|
4.3
|
84.7
|
1.0
|
OE1
|
G:GLU21
|
4.3
|
84.7
|
1.0
|
OD2
|
G:ASP17
|
4.3
|
89.9
|
1.0
|
CG
|
G:ASP17
|
4.4
|
89.9
|
1.0
|
OD1
|
G:ASP412
|
4.5
|
89.5
|
1.0
|
CG
|
G:ASP412
|
4.5
|
89.5
|
1.0
|
O
|
G:ALA16
|
4.5
|
92.9
|
1.0
|
CA
|
G:ASP17
|
4.5
|
89.9
|
1.0
|
CD
|
G:GLU21
|
4.5
|
84.7
|
1.0
|
C
|
G:ALA16
|
4.9
|
92.9
|
1.0
|
N
|
G:ASP17
|
4.9
|
89.9
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 7awt
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Magnesium Binding Sites List in 7awt
Magnesium binding site 6 out
of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1008
b:30.0
occ:1.00
|
ND1
|
G:HIS653
|
3.0
|
90.8
|
1.0
|
CE1
|
G:HIS653
|
4.0
|
90.8
|
1.0
|
CG
|
G:HIS653
|
4.0
|
90.8
|
1.0
|
CA
|
G:ALA327
|
4.1
|
87.1
|
1.0
|
CB
|
G:HIS653
|
4.1
|
90.8
|
1.0
|
CB
|
G:ALA327
|
4.1
|
87.1
|
1.0
|
CG2
|
G:VAL672
|
4.2
|
88.2
|
1.0
|
O
|
G:HOH1102
|
4.3
|
30.0
|
1.0
|
CG1
|
G:VAL672
|
4.5
|
88.2
|
1.0
|
CA
|
G:HIS653
|
4.6
|
90.8
|
1.0
|
CD2
|
G:PHE326
|
4.6
|
87.6
|
1.0
|
CE2
|
G:PHE326
|
4.7
|
87.6
|
1.0
|
O
|
G:ALA327
|
4.8
|
87.1
|
1.0
|
CG
|
G:GLU330
|
4.8
|
93.0
|
1.0
|
CB
|
G:VAL672
|
4.8
|
88.2
|
1.0
|
CB
|
G:GLU330
|
4.9
|
93.0
|
1.0
|
C
|
G:ALA327
|
5.0
|
87.1
|
1.0
|
N
|
G:ALA327
|
5.0
|
87.1
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 7awt
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Magnesium Binding Sites List in 7awt
Magnesium binding site 7 out
of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1009
b:30.0
occ:1.00
|
O
|
G:ASN137
|
4.1
|
82.0
|
1.0
|
MG
|
G:MG1006
|
4.3
|
30.0
|
1.0
|
C
|
G:ASN137
|
4.4
|
82.0
|
1.0
|
C
|
G:GLN138
|
4.6
|
82.9
|
1.0
|
CB
|
G:ASN137
|
4.7
|
82.0
|
1.0
|
O
|
G:GLN138
|
4.7
|
82.9
|
1.0
|
N
|
G:GLN138
|
4.8
|
82.9
|
1.0
|
N
|
G:ASP139
|
4.8
|
87.0
|
1.0
|
CA
|
G:GLN138
|
4.8
|
82.9
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 7awt
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Magnesium Binding Sites List in 7awt
Magnesium binding site 8 out
of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1010
b:30.0
occ:1.00
|
O
|
G:THR203
|
2.7
|
76.4
|
1.0
|
O
|
G:VAL198
|
2.7
|
78.2
|
1.0
|
O
|
G:PHE206
|
2.8
|
77.9
|
1.0
|
O
|
G:CYS201
|
3.1
|
89.2
|
1.0
|
OE1
|
G:GLU108
|
3.3
|
81.6
|
1.0
|
C
|
G:VAL198
|
3.5
|
78.2
|
1.0
|
CB
|
G:CYS201
|
3.7
|
89.2
|
1.0
|
C
|
G:THR203
|
3.8
|
76.4
|
1.0
|
C
|
G:PHE206
|
3.9
|
77.9
|
1.0
|
CA
|
G:VAL198
|
4.0
|
78.2
|
1.0
|
C
|
G:CYS201
|
4.0
|
89.2
|
1.0
|
SG
|
G:CYS201
|
4.1
|
89.2
|
1.0
|
O
|
G:LEU197
|
4.1
|
74.4
|
1.0
|
O
|
G:HOH1103
|
4.2
|
30.0
|
1.0
|
CD
|
G:GLU108
|
4.2
|
81.6
|
1.0
|
CG2
|
G:THR207
|
4.2
|
82.0
|
1.0
|
CA
|
G:GLY204
|
4.3
|
78.4
|
1.0
|
CA
|
G:CYS201
|
4.4
|
89.2
|
1.0
|
N
|
G:PHE206
|
4.4
|
77.9
|
1.0
|
N
|
G:GLU199
|
4.5
|
80.2
|
1.0
|
N
|
G:GLY204
|
4.5
|
78.4
|
1.0
|
N
|
G:VAL205
|
4.6
|
77.7
|
1.0
|
N
|
G:CYS201
|
4.7
|
89.2
|
1.0
|
CA
|
G:PHE206
|
4.7
|
77.9
|
1.0
|
OE2
|
G:GLU108
|
4.7
|
81.6
|
1.0
|
C
|
G:GLY204
|
4.8
|
78.4
|
1.0
|
N
|
G:THR203
|
4.8
|
76.4
|
1.0
|
CB
|
G:PHE206
|
4.8
|
77.9
|
1.0
|
CA
|
G:GLU199
|
4.8
|
80.2
|
1.0
|
N
|
G:THR207
|
4.9
|
82.0
|
1.0
|
CA
|
G:THR203
|
4.9
|
76.4
|
1.0
|
CB
|
G:VAL198
|
4.9
|
78.2
|
1.0
|
C
|
G:PRO202
|
5.0
|
75.0
|
1.0
|
|
Reference:
J.Schimpf,
S.Oppermann,
T.Gerasimova,
A.F.Santos Seica,
P.Hellwig,
I.Grishkovskaya,
D.Haselbach,
T.Friedrich.
Structure of the Peripheral Arm of A Minimalistic Respiratory Complex I To Be Published.
Page generated: Wed Oct 2 10:14:42 2024
|