Magnesium in PDB 7awt: E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm

The structure of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm also contains other interesting chemical elements:

Iron

(Fe)

32 atoms

The binding sites of Magnesium atom in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm (pdb code 7awt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm, PDB code: 7awt:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg202 b:30.0 occ:1.00 OE1 E:GLU70 3.3 81.3 1.0 CG2 I:VAL175 3.6 84.5 1.0 CD2 G:TYR173 4.0 77.7 1.0 NE2 G:GLN138 4.2 82.9 1.0 O G:ARG183 4.2 82.8 1.0 CG G:TYR173 4.3 77.7 1.0 CD E:GLU70 4.4 81.3 1.0 O G:PRO184 4.4 83.0 1.0 CE2 G:TYR173 4.4 77.7 1.0 CB G:TYR173 4.6 77.7 1.0 CD1 G:TYR180 4.7 75.4 1.0 C G:PRO184 4.8 83.0 1.0 CE1 G:TYR180 4.8 75.4 1.0 CA G:PRO184 4.8 83.0 1.0 CD I:LYS176 4.9 87.8 1.0 OE2 E:GLU70 5.0 81.3 1.0

Magnesium binding site 2 out of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg503 b:30.0 occ:1.00 CB F:ALA205 3.0 93.3 1.0 N F:ALA205 3.4 93.3 1.0 CA F:ALA205 3.5 93.3 1.0 SG F:CYS215 3.5 90.0 1.0 O F:THR214 3.5 88.0 1.0 O F:LYS72 3.9 93.7 1.0 CA F:CYS215 4.0 90.0 1.0 NZ F:LYS72 4.1 93.7 1.0 CG F:LYS72 4.2 93.7 1.0 CB F:CYS215 4.2 90.0 1.0 C F:PRO204 4.2 89.4 1.0 C F:THR214 4.5 88.0 1.0 CB F:PRO204 4.5 89.4 1.0 N F:CYS215 4.7 90.0 1.0 C F:LYS72 4.7 93.7 1.0 CD1 F:LEU75 4.8 97.3 1.0 CD F:PRO204 4.9 89.4 1.0 O F:PRO204 4.9 89.4 1.0 CA F:PRO204 4.9 89.4 1.0 CD F:LYS72 4.9 93.7 1.0 C F:ALA205 4.9 93.3 1.0 N F:PRO204 4.9 89.4 1.0 N F:VAL216 4.9 85.6 1.0 CA F:LYS72 5.0 93.7 1.0 O F:HOH622 5.0 30.0 1.0

Magnesium binding site 3 out of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1005 b:30.0 occ:1.00 OD2 G:ASP617 2.0 84.6 1.0 OD2 G:ASP731 2.1 88.6 1.0 OE1 G:GLN632 2.5 83.0 1.0 OE2 G:GLU647 2.5 85.3 1.0 CG G:ASP731 3.1 88.6 1.0 CG G:ASP617 3.3 84.6 1.0 CB G:ASP731 3.4 88.6 1.0 CD G:GLN632 3.7 83.0 1.0 CD G:GLU647 3.8 85.3 1.0 OD1 G:ASP729 3.8 89.1 1.0 OD1 G:ASP617 4.0 84.6 1.0 NH1 G:ARG650 4.1 87.1 1.0 OD1 G:ASP731 4.2 88.6 1.0 CB G:GLN632 4.2 83.0 1.0 CB G:ASP617 4.3 84.6 1.0 OE1 G:GLU647 4.5 85.3 1.0 CG G:GLN632 4.6 83.0 1.0 NE2 G:GLN632 4.7 83.0 1.0 CG G:GLU647 4.7 85.3 1.0 CA G:ASP731 4.8 88.6 1.0 N G:ASP617 4.9 84.6 1.0 CG G:ASP729 4.9 89.1 1.0

Magnesium binding site 4 out of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1006 b:30.0 occ:1.00 N G:ASN137 3.8 82.0 1.0 CG I:LYS163 4.3 91.0 1.0 ND2 G:ASN137 4.3 82.0 1.0 MG G:MG1009 4.3 30.0 1.0 NH1 G:ARG136 4.3 83.2 1.0 CA G:ARG136 4.4 83.2 1.0 CB G:ARG136 4.4 83.2 1.0 CE I:LYS163 4.4 91.0 1.0 CB G:ASN137 4.5 82.0 1.0 CG G:ASN137 4.5 82.0 1.0 C G:ARG136 4.6 83.2 1.0 CA G:ASN137 4.6 82.0 1.0 O G:ASN137 4.7 82.0 1.0 CG G:ARG136 4.8 83.2 1.0 CD G:ARG136 4.9 83.2 1.0

Magnesium binding site 5 out of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1007 b:30.0 occ:1.00 CB G:ASP17 3.7 89.9 1.0 OD2 G:ASP412 3.9 89.5 1.0 OE2 G:GLU21 4.3 84.7 1.0 OE1 G:GLU21 4.3 84.7 1.0 OD2 G:ASP17 4.3 89.9 1.0 CG G:ASP17 4.4 89.9 1.0 OD1 G:ASP412 4.5 89.5 1.0 CG G:ASP412 4.5 89.5 1.0 O G:ALA16 4.5 92.9 1.0 CA G:ASP17 4.5 89.9 1.0 CD G:GLU21 4.5 84.7 1.0 C G:ALA16 4.9 92.9 1.0 N G:ASP17 4.9 89.9 1.0

Magnesium binding site 6 out of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1008 b:30.0 occ:1.00 ND1 G:HIS653 3.0 90.8 1.0 CE1 G:HIS653 4.0 90.8 1.0 CG G:HIS653 4.0 90.8 1.0 CA G:ALA327 4.1 87.1 1.0 CB G:HIS653 4.1 90.8 1.0 CB G:ALA327 4.1 87.1 1.0 CG2 G:VAL672 4.2 88.2 1.0 O G:HOH1102 4.3 30.0 1.0 CG1 G:VAL672 4.5 88.2 1.0 CA G:HIS653 4.6 90.8 1.0 CD2 G:PHE326 4.6 87.6 1.0 CE2 G:PHE326 4.7 87.6 1.0 O G:ALA327 4.8 87.1 1.0 CG G:GLU330 4.8 93.0 1.0 CB G:VAL672 4.8 88.2 1.0 CB G:GLU330 4.9 93.0 1.0 C G:ALA327 5.0 87.1 1.0 N G:ALA327 5.0 87.1 1.0

Magnesium binding site 7 out of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1009 b:30.0 occ:1.00 O G:ASN137 4.1 82.0 1.0 MG G:MG1006 4.3 30.0 1.0 C G:ASN137 4.4 82.0 1.0 C G:GLN138 4.6 82.9 1.0 CB G:ASN137 4.7 82.0 1.0 O G:GLN138 4.7 82.9 1.0 N G:GLN138 4.8 82.9 1.0 N G:ASP139 4.8 87.0 1.0 CA G:GLN138 4.8 82.9 1.0

Magnesium binding site 8 out of 8 in the E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of E. Coli Nadh Quinone Oxidoreductase Hydrophilic Arm within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1010 b:30.0 occ:1.00 O G:THR203 2.7 76.4 1.0 O G:VAL198 2.7 78.2 1.0 O G:PHE206 2.8 77.9 1.0 O G:CYS201 3.1 89.2 1.0 OE1 G:GLU108 3.3 81.6 1.0 C G:VAL198 3.5 78.2 1.0 CB G:CYS201 3.7 89.2 1.0 C G:THR203 3.8 76.4 1.0 C G:PHE206 3.9 77.9 1.0 CA G:VAL198 4.0 78.2 1.0 C G:CYS201 4.0 89.2 1.0 SG G:CYS201 4.1 89.2 1.0 O G:LEU197 4.1 74.4 1.0 O G:HOH1103 4.2 30.0 1.0 CD G:GLU108 4.2 81.6 1.0 CG2 G:THR207 4.2 82.0 1.0 CA G:GLY204 4.3 78.4 1.0 CA G:CYS201 4.4 89.2 1.0 N G:PHE206 4.4 77.9 1.0 N G:GLU199 4.5 80.2 1.0 N G:GLY204 4.5 78.4 1.0 N G:VAL205 4.6 77.7 1.0 N G:CYS201 4.7 89.2 1.0 CA G:PHE206 4.7 77.9 1.0 OE2 G:GLU108 4.7 81.6 1.0 C G:GLY204 4.8 78.4 1.0 N G:THR203 4.8 76.4 1.0 CB G:PHE206 4.8 77.9 1.0 CA G:GLU199 4.8 80.2 1.0 N G:THR207 4.9 82.0 1.0 CA G:THR203 4.9 76.4 1.0 CB G:VAL198 4.9 78.2 1.0 C G:PRO202 5.0 75.0 1.0

J.Schimpf, S.Oppermann, T.Gerasimova, A.F.Santos Seica, P.Hellwig, I.Grishkovskaya, D.Haselbach, T.Friedrich. Structure of the Peripheral Arm of A Minimalistic Respiratory Complex I To Be Published.