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Magnesium in PDB 7axy: Crystal Structure of A Shortened Ipgc Variant in Complex with 3-Amino- 5-(Pyrrolidin-1-Yl)-1H-Pyrazole-4-Carbonitrile

Protein crystallography data

The structure of Crystal Structure of A Shortened Ipgc Variant in Complex with 3-Amino- 5-(Pyrrolidin-1-Yl)-1H-Pyrazole-4-Carbonitrile, PDB code: 7axy was solved by M.Gardonyi, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.24 / 1.63
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 57.517, 57.517, 159.445, 90, 90, 120
R / Rfree (%) 19.7 / 23

Other elements in 7axy:

The structure of Crystal Structure of A Shortened Ipgc Variant in Complex with 3-Amino- 5-(Pyrrolidin-1-Yl)-1H-Pyrazole-4-Carbonitrile also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Shortened Ipgc Variant in Complex with 3-Amino- 5-(Pyrrolidin-1-Yl)-1H-Pyrazole-4-Carbonitrile (pdb code 7axy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Shortened Ipgc Variant in Complex with 3-Amino- 5-(Pyrrolidin-1-Yl)-1H-Pyrazole-4-Carbonitrile, PDB code: 7axy:

Magnesium binding site 1 out of 1 in 7axy

Go back to Magnesium Binding Sites List in 7axy
Magnesium binding site 1 out of 1 in the Crystal Structure of A Shortened Ipgc Variant in Complex with 3-Amino- 5-(Pyrrolidin-1-Yl)-1H-Pyrazole-4-Carbonitrile


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Shortened Ipgc Variant in Complex with 3-Amino- 5-(Pyrrolidin-1-Yl)-1H-Pyrazole-4-Carbonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:40.0
occ:1.00
O B:HOH363 2.1 38.4 1.0
O B:HOH323 2.1 36.8 1.0
O B:HOH349 2.2 39.1 1.0
O B:HOH304 2.2 32.2 1.0
O B:HOH360 2.3 40.1 1.0
O B:SER134 4.0 28.4 1.0
NZ B:LYS140 4.1 31.6 1.0
O B:GLN132 4.1 33.1 1.0
O B:HOH309 4.2 33.8 1.0
OD1 B:ASN135 4.3 44.9 1.0
O B:ILE131 4.4 31.6 1.0
C B:GLN132 4.7 30.7 1.0
CE B:LYS140 4.8 31.3 1.0

Reference:

M.Gardonyi, A.Heine, G.Klebe. Crystal Structure of A Shortened Ipgc Variant in Complex with 3-Amino-5-(Pyrrolidin-1-Yl)-1H-Pyrazole-4-Carbonitrile To Be Published.
Page generated: Wed Oct 2 10:14:49 2024

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