Magnesium in PDB 7b2c: Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon

Enzymatic activity of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon

All present enzymatic activity of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon:
2.8.4.1;

Protein crystallography data

The structure of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon, PDB code: 7b2c was solved by T.Wagner, O.N.Lemaire, S.Engilberge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.90 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 83.791, 147.186, 113.376, 90, 107.2, 90
R / Rfree (%) 17.4 / 20.1

Other elements in 7b2c:

The structure of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon also contains other interesting chemical elements:

Potassium (K) 17 atoms
Nickel (Ni) 2 atoms
Xenon (Xe) 16 atoms
Chlorine (Cl) 5 atoms
Sodium (Na) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon (pdb code 7b2c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon, PDB code: 7b2c:

Magnesium binding site 1 out of 1 in 7b2c

Go back to Magnesium Binding Sites List in 7b2c
Magnesium binding site 1 out of 1 in the Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum Gassed with Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg711

b:38.5
occ:1.00
 OD1 D:ASP589 1.8 32.7 1.0
OD1 A:ASP589 2.0 31.0 1.0
O D:HOH921 2.3 25.4 1.0
O A:HOH1376 2.3 19.7 1.0
NE2 A:HIS595 2.6 50.6 1.0
CG D:ASP589 2.8 26.9 1.0
CG A:ASP589 3.0 28.5 1.0
NE2 D:HIS595 3.0 54.8 1.0
OD2 D:ASP589 3.2 30.5 1.0
CE1 D:HIS595 3.3 54.3 1.0
OD2 A:ASP589 3.3 32.5 1.0
CD2 A:HIS595 3.5 49.2 1.0
CE1 A:HIS595 3.6 50.9 1.0
CB D:ASP589 4.1 16.4 1.0
CD2 D:HIS595 4.2 53.2 1.0
CB A:ASP589 4.3 18.4 1.0
O A:HOH1663 4.4 39.3 1.0
ND1 D:HIS595 4.5 53.8 1.0
CA D:ASP589 4.6 14.4 1.0
OE1 A:GLU587 4.7 12.3 1.0
CG A:HIS595 4.7 48.0 1.0
OE1 D:GLU587 4.7 13.7 1.0
CD1 D:ILE592 4.7 20.7 1.0
ND1 A:HIS595 4.8 50.1 1.0
CA A:ASP589 4.8 13.4 1.0
CD1 A:ILE592 4.9 16.6 1.0
N D:ASP589 4.9 15.8 1.0
CG D:HIS595 4.9 51.9 1.0

Reference:

C.J.Hahn, O.N.Lemaire, J.Kahnt, S.Engilberge, G.Wegener, T.Wagner. Crystal Structure of A Key Enzyme For Anaerobic Ethane Activation. Science V. 373 118 2021.
ISSN: ESSN 1095-9203
PubMed: 34210888
DOI: 10.1126/SCIENCE.ABG1765
Page generated: Sat Aug 21 16:19:55 2021

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