Magnesium in PDB 7bgy: Cryo-Em Structure of Kdpfabc in E2PI State with MGF4

All present enzymatic activity of Cryo-Em Structure of Kdpfabc in E2PI State with MGF4:
7.2.2.6;

The structure of Cryo-Em Structure of Kdpfabc in E2PI State with MGF4 also contains other interesting chemical elements:

Fluorine

(F)

4 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Kdpfabc in E2PI State with MGF4 (pdb code 7bgy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Kdpfabc in E2PI State with MGF4, PDB code: 7bgy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Kdpfabc in E2PI State with MGF4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Kdpfabc in E2PI State with MGF4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg701 b:69.2 occ:1.00 F4 B:MF4702 2.0 74.2 1.0 OD2 B:ASP307 2.0 68.8 1.0 OD1 B:ASP518 2.1 66.3 1.0 O B:THR309 2.3 74.1 1.0 CG B:ASP307 3.0 68.8 1.0 CG B:ASP518 3.3 66.3 1.0 OD1 B:ASP307 3.4 68.8 1.0 C B:THR309 3.5 74.1 1.0 HB B:THR309 3.5 74.1 1.0 OD2 B:ASP518 3.8 66.3 1.0 MG B:MF4702 3.8 74.2 1.0 H B:ASP518 3.8 66.3 1.0 HA3 B:GLY519 3.9 66.2 1.0 H B:THR309 4.0 74.1 1.0 OD2 B:ASP522 4.0 67.1 1.0 HA3 B:GLY310 4.1 73.6 1.0 HA3 B:GLY160 4.1 76.5 1.0 H B:THR311 4.1 69.7 1.0 H B:GLY519 4.2 66.2 1.0 N B:GLY519 4.2 66.2 1.0 CA B:THR309 4.2 74.1 1.0 CB B:THR309 4.2 74.1 1.0 O B:GLY160 4.2 76.5 1.0 N B:THR309 4.3 74.1 1.0 CB B:ASP307 4.3 68.8 1.0 HB3 B:ASP307 4.4 68.8 1.0 HG22 B:THR309 4.4 74.1 1.0 N B:GLY310 4.5 73.6 1.0 C B:ASP518 4.5 66.3 1.0 CB B:ASP518 4.5 66.3 1.0 CA B:GLY519 4.5 66.2 1.0 HA2 B:GLY160 4.5 76.5 1.0 F1 B:MF4702 4.6 74.2 1.0 N B:ASP518 4.6 66.3 1.0 F2 B:MF4702 4.6 74.2 1.0 OG1 B:THR311 4.6 69.7 1.0 H B:LYS308 4.6 74.5 1.0 HD21 B:ASN521 4.7 70.5 1.0 CA B:GLY310 4.7 73.6 1.0 CA B:GLY160 4.7 76.5 1.0 HB2 B:ASP307 4.7 68.8 1.0 N B:THR311 4.7 69.7 1.0 CA B:ASP518 4.7 66.3 1.0 OD1 B:ASN521 4.8 70.5 1.0 HB3 B:ASP518 4.8 66.3 1.0 C B:GLY160 4.8 76.5 1.0 CG2 B:THR309 4.9 74.1 1.0 F3 B:MF4702 4.9 74.2 1.0 HA2 B:GLY519 4.9 66.2 1.0 CG B:ASP522 5.0 67.1 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Kdpfabc in E2PI State with MGF4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Kdpfabc in E2PI State with MGF4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:74.2 occ:1.00 MG B:MF4702 0.0 74.2 1.0 F2 B:MF4702 1.8 74.2 1.0 F3 B:MF4702 1.8 74.2 1.0 F1 B:MF4702 1.8 74.2 1.0 F4 B:MF4702 1.8 74.2 1.0 OD1 B:ASP307 2.6 68.8 1.0 H B:THR309 2.8 74.1 1.0 HG1 B:THR471 2.8 73.8 1.0 H B:GLY472 2.9 74.2 1.0 HB B:THR309 3.1 74.1 1.0 OG1 B:THR471 3.1 73.8 1.0 HA3 B:GLY160 3.3 76.5 1.0 H B:LYS308 3.3 74.5 1.0 HD21 B:ASN521 3.5 70.5 1.0 HA B:THR471 3.6 73.8 1.0 CG B:ASP307 3.6 68.8 1.0 N B:THR309 3.6 74.1 1.0 N B:GLY472 3.7 74.2 1.0 MG B:MG701 3.8 69.2 1.0 CB B:THR309 3.8 74.1 1.0 O B:THR159 3.8 77.7 1.0 HZ3 B:LYS499 3.8 68.6 1.0 OD2 B:ASP307 3.8 68.8 1.0 OG1 B:THR309 3.8 74.1 1.0 HG1 B:THR309 3.9 74.1 1.0 CB B:THR471 4.0 73.8 1.0 HB B:THR471 4.0 73.8 1.0 HB3 B:LYS308 4.0 74.5 1.0 CA B:THR471 4.1 73.8 1.0 N B:LYS308 4.1 74.5 1.0 CA B:GLY160 4.1 76.5 1.0 CA B:THR309 4.3 74.1 1.0 ND2 B:ASN521 4.3 70.5 1.0 C B:GLY160 4.3 76.5 1.0 HZ2 B:LYS499 4.3 68.6 1.0 O B:THR309 4.4 74.1 1.0 C B:THR471 4.4 73.8 1.0 HB2 B:ASP473 4.5 78.4 1.0 NZ B:LYS499 4.5 68.6 1.0 O B:GLY160 4.5 76.5 1.0 HA3 B:GLY472 4.5 74.2 1.0 HG2 B:GLU161 4.6 80.2 1.0 C B:LYS308 4.6 74.5 1.0 CA B:GLY472 4.7 74.2 1.0 HD22 B:ASN521 4.7 70.5 1.0 C B:THR159 4.7 77.7 1.0 HA2 B:GLY160 4.7 76.5 1.0 CA B:LYS308 4.7 74.5 1.0 CB B:LYS308 4.8 74.5 1.0 HE3 B:LYS308 4.9 74.5 1.0 C B:THR309 4.9 74.1 1.0 CB B:ASP307 4.9 68.8 1.0 N B:GLU161 4.9 80.2 1.0 H B:ASP473 4.9 78.4 1.0 HA B:ASP307 4.9 68.8 1.0 N B:GLY160 4.9 76.5 1.0 HZ1 B:LYS499 5.0 68.6 1.0

M.E.Sweet, C.Larsen, B.P.Pedersen, D.L.Stokes. Cryo-Em Structure of Kdpfabc in E2PI State with MGF4 To Be Published.