Magnesium in PDB 7bh2: Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+

Enzymatic activity of Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+

All present enzymatic activity of Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+:
7.2.2.6;

Other elements in 7bh2:

The structure of Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+ also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Potassium (K) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+ (pdb code 7bh2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+, PDB code: 7bh2:

Magnesium binding site 1 out of 1 in 7bh2

Go back to Magnesium Binding Sites List in 7bh2
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:77.4
occ:1.00
OD2 B:ASP307 2.1 84.8 1.0
O B:THR309 2.1 90.1 1.0
OD1 B:ASP518 2.4 83.8 1.0
F2 B:BEF803 2.5 89.8 1.0
CG B:ASP307 3.1 84.8 1.0
C B:THR309 3.4 90.1 1.0
HA3 B:GLY310 3.5 90.2 1.0
H B:GLY519 3.5 83.0 1.0
HB3 B:ASP307 3.5 84.8 1.0
CG B:ASP518 3.6 83.8 1.0
BE B:BEF803 3.7 89.8 1.0
HA3 B:GLY519 3.7 83.0 1.0
H B:ASP518 3.8 83.8 1.0
OD2 B:ASP522 3.9 84.1 1.0
OD1 B:ASP307 3.9 84.8 1.0
CB B:ASP307 3.9 84.8 1.0
HB B:THR309 4.0 90.1 1.0
N B:GLY519 4.0 83.0 1.0
H B:THR309 4.0 90.1 1.0
OD2 B:ASP518 4.2 83.8 1.0
H B:THR311 4.2 87.0 1.0
N B:GLY310 4.3 90.2 1.0
CA B:GLY310 4.3 90.2 1.0
HB2 B:ASP307 4.3 84.8 1.0
CA B:THR309 4.3 90.1 1.0
N B:THR309 4.3 90.1 1.0
CA B:GLY519 4.3 83.0 1.0
F3 B:BEF803 4.4 89.8 1.0
N B:ASP518 4.6 83.8 1.0
CB B:THR309 4.6 90.1 1.0
F1 B:BEF803 4.6 89.8 1.0
HA2 B:GLY519 4.7 83.0 1.0
N B:THR311 4.7 87.0 1.0
OG1 B:THR311 4.7 87.0 1.0
HG22 B:THR309 4.7 90.1 1.0
H B:LYS308 4.8 90.3 1.0
OD1 B:ASN521 4.8 86.3 1.0
C B:ASP518 4.8 83.8 1.0
CB B:ASP518 4.8 83.8 1.0
HG1 B:THR311 4.9 87.0 1.0
C B:GLY310 4.9 90.2 1.0
CG B:ASP522 4.9 84.1 1.0
HA3 B:GLY160 4.9 92.5 1.0
CA B:ASP518 4.9 83.8 1.0
HD21 B:ASN521 4.9 86.3 1.0

Reference:

M.E.Sweet, C.Larsen, B.P.Pedersen, D.L.Stokes. Cryo-Em Structure of Kdpfabc in E2-P State with BEF3 and K+ To Be Published.
Page generated: Wed Mar 3 15:01:29 2021

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