Atomistry » Magnesium » PDB 7bcz-7boh » 7bjt
Atomistry »
  Magnesium »
    PDB 7bcz-7boh »
      7bjt »

Magnesium in PDB 7bjt: Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt

Enzymatic activity of Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt

All present enzymatic activity of Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt:
4.2.2.3;

Protein crystallography data

The structure of Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt, PDB code: 7bjt was solved by M.Czjzek, T.Roret, D.Jouanneau, N.Le Duff, A.Jeudy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.70 / 1.42
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 163.39, 163.39, 166.73, 90, 90, 120
R / Rfree (%) 16.1 / 17

Other elements in 7bjt:

The structure of Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt (pdb code 7bjt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt, PDB code: 7bjt:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7bjt

Go back to Magnesium Binding Sites List in 7bjt
Magnesium binding site 1 out of 4 in the Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:22.5
occ:1.00
 OG1 A:THR83 2.8 13.7 1.0
O A:LEU141 2.9 13.1 1.0
O A:HOH1063 2.9 13.0 1.0
NE2 A:HIS130 3.1 13.6 1.0
N A:HIS84 3.5 12.8 1.0
C A:THR83 3.6 13.1 1.0
O A:ASP77 3.7 14.0 1.0
CA A:HIS84 3.7 12.7 1.0
CB A:THR83 3.7 13.5 1.0
CD2 A:HIS130 3.8 13.6 1.0
O A:THR83 3.8 12.9 1.0
CB A:PRO75 3.8 13.8 1.0
CA A:PHE142 3.8 12.5 1.0
C A:LEU141 3.9 13.1 1.0
CA A:PRO75 4.1 14.1 1.0
N A:LYS76 4.1 15.0 1.0
N A:ASP77 4.2 14.5 1.0
CB A:HIS84 4.2 12.8 1.0
CE1 A:HIS130 4.2 13.6 1.0
CA A:THR83 4.3 13.4 1.0
N A:PHE142 4.3 12.7 1.0
CD1 A:PHE142 4.4 12.3 1.0
C A:PRO75 4.6 14.6 1.0
C A:PHE142 4.6 12.4 1.0
C A:ASP77 4.6 13.9 1.0
N A:TRP143 4.6 12.3 1.0
CB A:PHE142 4.7 12.4 1.0
CD2 A:HIS87 4.7 12.7 1.0
CG A:PRO75 4.7 13.8 1.0
CG A:PHE142 4.8 12.3 1.0
ND1 A:HIS84 4.8 12.8 1.0
CA A:ASP77 4.9 14.3 1.0
CG A:HIS84 5.0 12.7 1.0
C A:LYS76 5.0 15.0 1.0

Magnesium binding site 2 out of 4 in 7bjt

Go back to Magnesium Binding Sites List in 7bjt
Magnesium binding site 2 out of 4 in the Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:12.4
occ:1.00
 O A:HOH1415 3.0 17.7 1.0
O A:HOH990 3.1 13.9 1.0
O A:HOH1425 3.2 20.3 1.0
ND2 A:ASN240 3.4 16.7 1.0
N A:TYR136 3.6 13.4 1.0
CD1 A:TYR136 3.7 14.1 1.0
CA A:SER135 3.7 13.2 1.0
CB A:ASN240 3.8 15.9 1.0
CG A:ASN240 4.1 16.4 1.0
OG A:SER135 4.2 12.8 1.0
C A:SER135 4.2 13.3 1.0
O A:ARG134 4.2 13.9 1.0
C3 A:GOL804 4.3 17.3 1.0
CZ3 A:TRP143 4.3 12.2 1.0
CB A:SER135 4.4 13.0 1.0
CH2 A:TRP143 4.4 12.1 1.0
CE1 A:TYR136 4.4 14.0 1.0
CG A:TYR136 4.6 13.9 1.0
CB A:TYR136 4.6 13.8 1.0
N A:SER135 4.6 13.4 1.0
CA A:TYR136 4.7 13.6 1.0
C A:ARG134 4.7 14.1 1.0
C2 A:GOL804 4.7 16.8 1.0
N A:ASN240 4.9 15.2 1.0
CA A:ASN240 4.9 15.5 1.0
O2 A:GOL804 4.9 16.5 1.0
O A:HOH1130 4.9 20.9 1.0

Magnesium binding site 3 out of 4 in 7bjt

Go back to Magnesium Binding Sites List in 7bjt
Magnesium binding site 3 out of 4 in the Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg801

b:34.4
occ:1.00
 OH B:TYR268 2.6 18.9 1.0
OG1 B:THR202 2.7 16.1 1.0
OD1 B:ASN257 3.0 19.9 1.0
C B:HIS198 3.4 18.3 1.0
O B:HIS198 3.4 17.9 1.0
O B:HOH1307 3.5 31.4 1.0
CZ B:TYR268 3.5 17.3 1.0
CE1 B:TYR268 3.5 17.1 1.0
N B:ASN199 3.6 17.9 1.0
CZ B:PHE282 3.6 15.7 1.0
CG B:ASN257 3.9 19.5 1.0
CA B:ASN199 3.9 17.3 1.0
CB B:THR202 3.9 15.6 1.0
CE2 B:PHE282 3.9 15.5 1.0
N B:HIS198 3.9 19.1 1.0
CG B:PRO261 4.0 16.5 1.0
CA B:HIS198 4.0 19.5 0.5
CB B:ASN257 4.1 19.1 1.0
CA B:HIS198 4.1 18.6 0.5
O B:ASN257 4.2 19.2 1.0
OE2 B:GLU270 4.6 24.6 1.0
CB B:PRO261 4.6 16.4 1.0
CG2 B:THR202 4.7 15.4 1.0
CA B:ASN257 4.7 18.8 1.0
CE1 B:PHE282 4.7 15.7 1.0
CB B:ASN199 4.8 17.6 1.0
CE2 B:TYR268 4.8 17.2 1.0
C B:VAL197 4.8 19.6 1.0
CD1 B:TYR268 4.9 16.7 1.0
C B:ASN257 4.9 19.0 1.0
N B:THR202 5.0 15.4 1.0
C B:ASN199 5.0 16.9 1.0
CA B:THR202 5.0 15.3 1.0

Magnesium binding site 4 out of 4 in 7bjt

Go back to Magnesium Binding Sites List in 7bjt
Magnesium binding site 4 out of 4 in the Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg806

b:11.7
occ:1.00
 O B:HOH1248 3.0 15.6 1.0
N B:GLY443 3.2 15.3 1.0
N B:ALA319 3.2 14.7 1.0
O B:HOH1116 3.4 15.2 1.0
CB B:ASP318 3.6 14.2 1.0
OG1 B:THR417 3.6 14.3 1.0
CB B:TYR440 3.7 12.8 1.0
CA B:GLY443 3.8 15.2 1.0
CB B:ALA319 3.8 15.5 1.0
CA B:ASP318 3.9 14.2 1.0
N B:LYS442 4.0 14.7 1.0
CB B:THR417 4.0 13.8 1.0
C B:ASP318 4.0 14.4 1.0
CA B:ALA319 4.1 15.4 1.0
C B:LYS442 4.2 15.3 1.0
CA B:LYS442 4.2 15.5 1.0
CG B:TYR440 4.6 12.9 1.0
C B:TYR440 4.6 12.9 1.0
C B:GLU441 4.6 14.0 1.0
CG B:ASP318 4.7 14.2 1.0
CG2 B:THR417 4.7 14.0 1.0
N B:GLU441 4.8 13.2 1.0
OE2 B:GLU414 4.8 17.7 1.0
O B:TYR440 4.8 13.0 1.0
CA B:TYR440 4.8 12.8 1.0
O B:GLU414 4.9 18.5 1.0
C B:GLY443 4.9 15.1 1.0
CG B:GLU414 4.9 19.1 1.0

Reference:

D.Jouanneau, L.J.Klau, R.Larocque, A.Jaffrennou, G.Duval, N.Le Duff, T.Roret, A.Jeudy, F.L.Aachmann, M.Czjzek, F.Thomas. Structure-Function Analysis of A New PL17 Oligoalginate Lyase From the Marine Bacterium Zobellia Galactanivorans Dsijt. Glycobiology 2021.
ISSN: ESSN 1460-2423
PubMed: 34184062
DOI: 10.1093/GLYCOB/CWAB058
Page generated: Wed Oct 2 10:27:28 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy