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Magnesium in PDB 7boe: Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)

Other elements in 7boe:

The structure of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 152;

Binding sites:

The binding sites of Magnesium atom in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) (pdb code 7boe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 152 binding sites of Magnesium where determined in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement), PDB code: 7boe:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 152 in 7boe

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Magnesium binding site 1 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1601

b:17.5
occ:1.00
OP2 A:G450 3.4 16.3 1.0
O6 A:G481 4.0 21.9 1.0
O2' A:A451 4.1 21.9 1.0
OP2 A:G449 4.1 21.9 1.0
N7 A:G450 4.2 16.3 1.0
N7 A:G481 4.2 21.9 1.0
N7 A:G449 4.6 21.9 1.0
C8 A:G449 4.7 21.9 1.0
C8 A:G450 4.7 16.3 1.0
O5' A:G449 4.8 21.9 1.0
C6 A:G481 4.8 21.9 1.0
C5 A:G481 4.9 21.9 1.0
P A:G450 4.9 16.3 1.0
C2' A:A451 4.9 21.9 1.0

Magnesium binding site 2 out of 152 in 7boe

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Magnesium binding site 2 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1602

b:11.8
occ:1.00
OP2 A:C355 3.7 21.9 1.0
O6 A:G357 4.0 17.6 1.0
N7 A:A356 4.3 21.9 1.0
C5 A:C355 4.3 21.9 1.0
N7 A:G357 4.3 17.6 1.0
O2' A:C352 4.4 21.9 1.0
O2 A:C352 4.5 21.9 1.0
C8 A:A356 4.6 21.9 1.0
OP2 A:A356 4.7 21.9 1.0
C6 A:G357 4.7 17.6 1.0
C6 A:C355 4.8 21.9 1.0
C2' A:C352 4.9 21.9 1.0
C5 A:G357 4.9 17.6 1.0
P A:C355 4.9 21.9 1.0
C4 A:C355 5.0 21.9 1.0

Magnesium binding site 3 out of 152 in 7boe

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Magnesium binding site 3 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1603

b:25.5
occ:1.00
OP2 A:A415 3.4 38.3 1.0
N7 A:G416 3.7 34.4 1.0
OP2 A:G416 4.2 34.4 1.0
O6 A:G416 4.3 34.4 1.0
P A:A415 4.3 38.3 1.0
O5' A:A415 4.4 38.3 1.0
C5 A:G416 4.6 34.4 1.0
OP1 A:A415 4.6 38.3 1.0
C8 A:G416 4.6 34.4 1.0
C6 A:G416 4.8 34.4 1.0
O6 A:G417 4.8 29.3 1.0
O4 A:U426 4.9 26.2 1.0
O6 A:G425 4.9 30.2 1.0

Magnesium binding site 4 out of 152 in 7boe

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Magnesium binding site 4 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1604

b:13.9
occ:1.00
OP2 A:C352 2.4 21.9 1.0
O2 A:C330 3.4 21.9 1.0
P A:C352 3.7 21.9 1.0
N7 A:G354 4.0 21.9 1.0
O4' A:G331 4.0 21.9 1.0
O5' A:C352 4.1 21.9 1.0
N1 A:A59 4.1 21.9 1.0
C8 A:G354 4.4 21.9 1.0
C1' A:G331 4.4 21.9 1.0
O4' A:C352 4.5 21.9 1.0
C2 A:C330 4.5 21.9 1.0
OP1 A:C352 4.6 21.9 1.0
N6 A:A59 4.6 21.9 1.0
C6 A:A59 4.9 21.9 1.0
O3' A:G351 4.9 19.8 1.0
C4' A:C352 4.9 21.9 1.0
C2 A:A59 4.9 21.9 1.0
OP2 A:G354 5.0 21.9 1.0

Magnesium binding site 5 out of 152 in 7boe

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Magnesium binding site 5 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1605

b:17.9
occ:1.00
O6 A:G257 3.9 25.8 1.0
OP2 A:G266 4.0 23.4 1.0
N7 A:G257 4.1 25.8 1.0
O6 A:G258 4.3 24.2 1.0
O6 A:G259 4.5 20.1 1.0
C6 A:G257 4.5 25.8 1.0
C5 A:G257 4.6 25.8 1.0
N7 A:G258 4.7 24.2 1.0
N4 A:C267 4.8 16.6 1.0
OP1 A:G266 5.0 23.4 1.0

Magnesium binding site 6 out of 152 in 7boe

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Magnesium binding site 6 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1606

b:19.1
occ:1.00
N7 A:G259 3.7 20.1 1.0
O6 A:G260 4.2 18.7 1.0
OP2 A:G259 4.3 20.1 1.0
C8 A:G259 4.6 20.1 1.0
O6 A:G259 4.6 20.1 1.0
C5 A:G259 4.7 20.1 1.0
OP2 A:G258 4.8 24.2 1.0
OD1 T:ASN78 4.9 20.1 1.0
ND2 T:ASN78 5.0 20.1 1.0

Magnesium binding site 7 out of 152 in 7boe

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Magnesium binding site 7 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1607

b:20.3
occ:1.00
O6 A:G646 4.0 21.6 1.0
O6 A:G592 4.2 25.2 1.0
N7 A:G645 4.3 17.6 1.0
N4 A:C647 4.4 23.1 1.0
O4 A:U593 4.4 23.8 1.0
O6 A:G645 4.5 17.6 1.0
N7 A:G646 4.7 21.6 1.0
C5 A:G645 4.9 17.6 1.0
C6 A:G646 4.9 21.6 1.0

Magnesium binding site 8 out of 152 in 7boe

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Magnesium binding site 8 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1608

b:20.1
occ:1.00
N7 A:G362 2.5 21.9 1.0
C8 A:G362 3.1 21.9 1.0
C5 A:G362 3.7 21.9 1.0
OP2 A:G361 4.1 16.9 1.0
N7 A:G361 4.1 16.9 1.0
OP2 A:G362 4.2 21.9 1.0
O6 A:G362 4.2 21.9 1.0
C6 A:G362 4.4 21.9 1.0
C8 A:G361 4.4 16.9 1.0
N9 A:G362 4.5 21.9 1.0
C4 A:G362 4.7 21.9 1.0
O5' A:G361 4.9 16.9 1.0

Magnesium binding site 9 out of 152 in 7boe

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Magnesium binding site 9 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1609

b:12.3
occ:1.00
OP1 A:A547 2.4 21.9 1.0
OP1 A:G548 3.8 21.9 1.0
P A:A547 3.8 21.9 1.0
N7 A:G402 4.0 21.9 1.0
N4 A:C403 4.1 21.9 1.0
O5' A:G548 4.3 21.9 1.0
O6 A:G402 4.3 21.9 1.0
N4 A:C401 4.4 21.9 1.0
OP2 A:A547 4.5 21.9 1.0
C5' A:A547 4.5 21.9 1.0
C5 A:C401 4.5 21.9 1.0
C4 A:C401 4.6 21.9 1.0
O5' A:A547 4.6 21.9 1.0
P A:G548 4.7 21.9 1.0
O3' A:A546 4.8 21.9 1.0
C5 A:G402 4.8 21.9 1.0
C8 A:G402 4.9 21.9 1.0
C6 A:G402 4.9 21.9 1.0

Magnesium binding site 10 out of 152 in 7boe

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Magnesium binding site 10 out of 152 in the Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Bacterial 30S Ribosomal Subunit Assembly Complex State M (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1610

b:17.9
occ:1.00
OP2 A:G100 2.2 33.1 1.0
O6 A:G64 3.6 22.0 1.0
P A:G100 3.6 33.1 1.0
N7 A:G64 3.9 22.0 1.0
O5' A:G100 4.1 33.1 1.0
C2' A:C99 4.2 35.0 1.0
N7 A:A101 4.3 26.8 1.0
C6 A:G64 4.3 22.0 1.0
C5 A:G64 4.5 22.0 1.0
C3' A:C99 4.5 35.0 1.0
N7 A:G100 4.6 33.1 1.0
N6 A:A101 4.6 26.8 1.0
OP1 A:G100 4.6 33.1 1.0
O3' A:C99 4.6 35.0 1.0
C8 A:G100 4.7 33.1 1.0
C2 A:C99 4.9 35.0 1.0
O2 A:C99 4.9 35.0 1.0
O6 A:G102 5.0 21.9 1.0

Reference:

A.Schedlbauer, I.Iturrioz, B.Ochoa-Lizarralde, T.Diercks, J.P.Lopez-Alonso, J.L.Lavin, T.Kaminishi, R.Capuni, N.Dhimole, E.De Astigarraga, D.Gil-Carton, P.Fucini, S.R.Connell. A Conserved Rrna Switch Is Central to Decoding Site Maturation on the Small Ribosomal Subunit. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 34088665
DOI: 10.1126/SCIADV.ABF7547
Page generated: Fri Dec 17 10:04:45 2021

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