Magnesium in PDB 7bsj: Crystal Structure of Human ME2 R484W

All present enzymatic activity of Crystal Structure of Human ME2 R484W:
1.1.1.38;

The structure of Crystal Structure of Human ME2 R484W, PDB code: 7bsj was solved by W.L.Chen, S.C.Tai, H.C.Hung, M.C.Ho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.40 / 2.48
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	204.508, 58.443, 141.82, 90, 129.64, 90
R / Rfree (%)	23.9 / 27.7

The binding sites of Magnesium atom in the Crystal Structure of Human ME2 R484W (pdb code 7bsj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Human ME2 R484W, PDB code: 7bsj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Human ME2 R484W


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human ME2 R484W within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:37.5 occ:1.00 OD1 A:ASP256 1.8 35.5 1.0 O4 A:TTN605 2.1 43.4 1.0 O3 A:TTN605 2.3 43.7 1.0 OD1 A:ASP279 2.3 31.1 1.0 OE1 A:GLU255 2.4 31.2 1.0 CG A:ASP256 2.6 36.3 1.0 OD2 A:ASP256 2.8 37.5 1.0 C3 A:TTN605 2.9 44.9 1.0 C2 A:TTN605 3.0 46.4 1.0 O2 A:TTN605 3.3 53.4 1.0 CG A:ASP279 3.3 32.2 1.0 CD A:GLU255 3.4 31.4 1.0 C1 A:TTN605 3.7 50.4 1.0 CG A:GLU255 3.7 31.0 1.0 OD2 A:ASP279 3.8 33.4 1.0 NH1 A:ARG165 4.0 36.3 1.0 CB A:ASP256 4.1 35.3 1.0 O5 A:TTN605 4.1 45.4 1.0 NH2 A:ARG165 4.2 36.1 1.0 N A:ASP256 4.4 33.0 1.0 NZ A:LYS183 4.5 24.7 1.0 OE2 A:GLU255 4.5 31.5 1.0 CA A:ASP256 4.5 35.3 1.0 CE A:LYS183 4.5 24.1 1.0 CZ A:ARG165 4.6 35.7 1.0 CD2 A:LEU167 4.6 34.8 1.0 CG2 A:ILE179 4.6 24.9 1.0 CB A:ASP279 4.6 31.9 1.0 O1 A:TTN605 4.9 53.6 1.0 CB A:GLU255 5.0 30.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Human ME2 R484W


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human ME2 R484W within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1602 b:41.3 occ:1.00 O3 B:TTN1605 1.9 38.6 1.0 OD1 B:ASP256 2.0 29.6 1.0 OE1 B:GLU255 2.1 35.7 1.0 OD1 B:ASP279 2.2 37.9 1.0 O4 B:TTN1605 2.4 38.1 1.0 C2 B:TTN1605 2.9 40.7 1.0 C3 B:TTN1605 3.0 39.0 1.0 CG B:ASP256 3.0 31.1 1.0 CD B:GLU255 3.2 33.2 1.0 CG B:ASP279 3.3 38.2 1.0 O1 B:TTN1605 3.4 46.5 1.0 OD2 B:ASP256 3.5 30.0 1.0 NH1 B:ARG165 3.6 43.0 1.0 C1 B:TTN1605 3.6 44.1 1.0 CG B:GLU255 3.6 31.9 1.0 OD2 B:ASP279 3.7 38.6 1.0 NZ B:LYS183 4.0 25.7 1.0 O5 B:TTN1605 4.2 40.0 1.0 N B:ASP256 4.3 30.9 1.0 OE2 B:GLU255 4.3 33.2 1.0 CB B:ASP256 4.3 30.5 1.0 CE B:LYS183 4.4 25.4 1.0 CD2 B:LEU167 4.6 28.7 1.0 CB B:ASP279 4.6 37.8 1.0 CA B:ASP256 4.6 30.3 1.0 ND2 B:ASN467 4.7 29.5 1.0 CZ B:ARG165 4.8 40.0 1.0 O2 B:TTN1605 4.8 48.0 1.0 C5N B:NAD1601 4.8 32.2 1.0 CB B:GLU255 4.9 31.3 1.0 CG2 B:ILE179 5.0 27.2 1.0

J.Y.Hsieh, H.P.Yang, S.K.Tewary, H.C.Cheng, Y.L.Liu, S.C.Tai, W.L.Chen, C.H.Hsu, T.J.Huang, C.J.Chou, Y.N.Huang, C.T.Peng, M.C.Ho, G.Y.Liu, H.C.Hung. Single Nucleotide Variants Lead to Dysregulation of the Human Mitochondrial Nad(P)+-Dependent Malic Enzyme. Iscience 2021.
ISSN: ESSN 2589-0042
DOI: 10.1016/J.ISCI.2021.102034