Magnesium in PDB 7bsv: Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in Ptdser-Occluded E2-Alf State

The structure of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in Ptdser-Occluded E2-Alf State also contains other interesting chemical elements:

Fluorine	(F)	4 atoms
Aluminium	(Al)	1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in Ptdser-Occluded E2-Alf State (pdb code 7bsv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in Ptdser-Occluded E2-Alf State, PDB code: 7bsv:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in Ptdser-Occluded E2-Alf State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in Ptdser-Occluded E2-Alf State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:39.9 occ:1.00 F4 A:ALF1101 1.8 39.9 1.0 OD2 A:ASP409 2.5 34.0 1.0 OD1 A:ASP816 2.5 41.6 1.0 O A:THR411 2.8 41.6 1.0 CG A:ASP409 3.6 34.0 1.0 AL A:ALF1101 3.6 39.9 1.0 OD2 A:ASP820 3.6 41.6 1.0 OE2 A:GLU837 3.7 59.9 1.0 N A:GLY817 3.8 41.6 1.0 F2 A:ALF1101 3.8 39.9 1.0 CG A:ASP816 3.8 41.6 1.0 OD1 A:ASP409 4.0 34.0 1.0 CA A:GLY817 4.0 41.6 1.0 C A:THR411 4.0 41.6 1.0 O A:HOH1204 4.1 30.0 1.0 CD A:GLU837 4.2 59.9 1.0 F1 A:ALF1101 4.2 39.9 1.0 C A:ASP816 4.2 41.6 1.0 O A:GLY180 4.4 47.1 1.0 N A:ASP816 4.4 41.6 1.0 ND2 A:ASN819 4.5 41.6 1.0 OD2 A:ASP816 4.5 41.6 1.0 CA A:GLY180 4.6 47.1 1.0 OE1 A:GLU837 4.7 59.9 1.0 CA A:ASP816 4.7 41.6 1.0 CG A:ASP820 4.8 41.6 1.0 CB A:ASP816 4.8 41.6 1.0 O A:ASP816 4.8 41.6 1.0 CG A:GLU837 4.8 59.9 1.0 CB A:ASP409 4.8 34.0 1.0 CA A:GLY412 4.9 41.6 1.0 C A:GLY180 4.9 47.1 1.0 N A:GLY412 4.9 41.6 1.0 CA A:THR411 4.9 41.6 1.0 OD1 A:ASN819 5.0 41.6 1.0

H.Nakanishi, T.Nishizawa, K.Segawa, O.Nureki, Y.Fujiyoshi, S.Nagata, K.Abe. Transport Cycle of Plasma Membrane Flippase ATP11C By Cryo-Em. Cell Rep V. 32 08208 2020.
ISSN: ESSN 2211-1247
PubMed: 32997992
DOI: 10.1016/J.CELREP.2020.108208