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Magnesium in PDB 7bte: Lifeact-F-Actin Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Lifeact-F-Actin Complex (pdb code 7bte). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Lifeact-F-Actin Complex, PDB code: 7bte:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7bte

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Magnesium binding site 1 out of 5 in the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lifeact-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:78.1
occ:1.00
 O1A A:ADP402 1.9 72.1 1.0
O2B A:ADP402 1.9 72.1 1.0
O3A A:ADP402 2.0 72.1 1.0
PB A:ADP402 2.2 72.1 1.0
PA A:ADP402 2.3 72.1 1.0
O1B A:ADP402 2.6 72.1 1.0
O2A A:ADP402 3.3 72.1 1.0
O5' A:ADP402 3.5 72.1 1.0
O3B A:ADP402 3.6 72.1 1.0
CA A:GLY297 4.2 62.9 1.0
N A:GLY298 4.2 65.5 1.0
C A:GLY297 4.6 62.9 1.0
C5' A:ADP402 4.8 72.1 1.0
CA A:GLY152 4.8 62.8 1.0
O A:LYS332 5.0 71.5 1.0

Magnesium binding site 2 out of 5 in 7bte

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Magnesium binding site 2 out of 5 in the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lifeact-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg801

b:64.1
occ:1.00
 O1B C:ADP802 2.0 66.9 1.0
NE2 C:GLN505 2.0 63.0 1.0
CD C:GLN505 2.9 63.0 1.0
PB C:ADP802 3.1 66.9 1.0
OE1 C:GLN505 3.1 63.0 1.0
O2B C:ADP802 3.3 66.9 1.0
OD2 C:ASP522 3.7 56.9 1.0
OG C:SER382 4.0 65.5 1.0
O3B C:ADP802 4.2 66.9 1.0
O3A C:ADP802 4.2 66.9 1.0
N C:SER382 4.3 65.5 1.0
O C:GLY524 4.3 59.3 1.0
CG C:GLN505 4.3 63.0 1.0
O C:SER523 4.4 58.2 1.0
OD1 C:ASP522 4.4 56.9 1.0
CG C:ASP522 4.4 56.9 1.0
CG2 C:VAL527 4.5 54.8 1.0
CA C:GLY381 4.6 71.9 1.0
CB C:SER382 4.8 65.5 1.0

Magnesium binding site 3 out of 5 in 7bte

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Magnesium binding site 3 out of 5 in the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Lifeact-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1201

b:68.5
occ:1.00
 O1B E:ADP1202 2.2 68.4 1.0
OE1 E:GLN877 2.5 70.4 1.0
CD E:GLN877 3.6 70.4 1.0
PB E:ADP1202 3.6 68.4 1.0
O E:GLY896 3.9 62.5 1.0
NE2 E:GLN877 4.1 70.4 1.0
CG2 E:VAL899 4.2 56.7 1.0
O3B E:ADP1202 4.3 68.4 1.0
N E:GLY896 4.4 62.5 1.0
O2B E:ADP1202 4.5 68.4 1.0
O3A E:ADP1202 4.5 68.4 1.0
CA E:GLY753 4.7 74.7 1.0
C E:GLY896 4.7 62.5 1.0
CA E:GLY896 4.7 62.5 1.0
CG E:GLN877 4.8 70.4 1.0
OG E:SER754 4.9 69.0 1.0
CB E:GLN877 4.9 70.4 1.0
N E:SER754 5.0 69.0 1.0

Magnesium binding site 4 out of 5 in 7bte

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Magnesium binding site 4 out of 5 in the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Lifeact-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg1501

b:83.5
occ:1.00
 O3B G:ADP1502 1.9 78.9 1.0
O3A G:ADP1502 1.9 78.9 1.0
O1A G:ADP1502 2.0 78.9 1.0
PB G:ADP1502 2.3 78.9 1.0
PA G:ADP1502 2.3 78.9 1.0
NZ G:LYS1130 2.6 87.0 1.0
O1B G:ADP1502 2.9 78.9 1.0
O2A G:ADP1502 3.2 78.9 1.0
O2B G:ADP1502 3.6 78.9 1.0
O5' G:ADP1502 3.7 78.9 1.0
CE G:LYS1130 3.7 87.0 1.0
CA G:GLY1268 4.5 72.5 1.0
N G:GLY1414 4.5 73.8 1.0
CA G:GLY1413 4.6 71.3 1.0
O G:GLY1268 4.7 72.5 1.0
CD G:LYS1130 4.7 87.0 1.0
O G:LYS1448 4.9 78.5 1.0
C5' G:ADP1502 4.9 78.9 1.0
C G:GLY1268 5.0 72.5 1.0

Magnesium binding site 5 out of 5 in 7bte

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Magnesium binding site 5 out of 5 in the Lifeact-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Lifeact-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg1901

b:0.9
occ:1.00
 O3A I:ADP1902 1.8 96.9 1.0
CG I:ASP1641 2.2 97.8 1.0
C I:GLY1640 2.2 91.2 1.0
O3B I:ADP1902 2.3 96.9 1.0
O I:GLY1640 2.3 91.2 1.0
OD1 I:ASP1641 2.3 97.8 1.0
OD2 I:ASP1641 2.3 97.8 1.0
PB I:ADP1902 2.5 96.9 1.0
CA I:GLY1640 2.7 91.2 1.0
N I:ASP1641 2.9 97.8 1.0
PA I:ADP1902 3.1 96.9 1.0
CB I:ASP1641 3.2 97.8 1.0
O2B I:ADP1902 3.3 96.9 1.0
O5' I:ADP1902 3.4 96.9 1.0
O2A I:ADP1902 3.6 96.9 1.0
N I:GLY1640 3.6 91.2 1.0
CA I:ASP1641 3.6 97.8 1.0
O1B I:ADP1902 3.8 96.9 1.0
O1A I:ADP1902 4.3 96.9 1.0
C5' I:ADP1902 4.5 96.9 1.0
C I:ASP1641 4.5 97.8 1.0
C I:SER1639 4.6 82.2 1.0
N I:SER1498 4.7 95.0 1.0
OG I:SER1498 4.7 95.0 1.0
N I:GLY1642 4.8 83.3 1.0
C4' I:ADP1902 4.8 96.9 1.0
N I:GLY1499 4.9 99.1 1.0
CA I:GLY1497 4.9 98.6 1.0
O I:SER1639 4.9 82.2 1.0

Reference:

A.Kumari, V.K.Ragunath, M.Sirajuddin. Structural Insights Into Filament Recognition By Cellular Actin Markers To Be Published.
Page generated: Wed Oct 2 13:34:27 2024

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