Magnesium in PDB 7bvu: Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-

The structure of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-, PDB code: 7bvu was solved by S.Batra, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.83 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.619, 72.402, 157.957, 90, 90, 90
R / Rfree (%)	19.1 / 22.9

The structure of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- also contains other interesting chemical elements:

Aluminium	(Al)	2 atoms
Fluorine	(F)	8 atoms
Potassium	(K)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Magnesium atom in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- (pdb code 7bvu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-, PDB code: 7bvu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg304 b:24.4 occ:1.00 F4 A:ALF303 2.0 31.9 1.0 OG1 A:THR15 2.0 28.4 1.0 OG1 A:THR35 2.1 29.9 1.0 O3B A:GDP302 2.3 24.1 1.0 O A:HOH416 2.3 28.1 1.0 O A:HOH438 2.3 25.2 1.0 CB A:THR35 2.9 26.8 1.0 CB A:THR15 3.2 25.7 1.0 PB A:GDP302 3.5 27.8 1.0 AL A:ALF303 3.6 28.8 1.0 O1B A:GDP302 3.6 25.9 1.0 F1 A:ALF303 3.8 35.3 1.0 N A:THR35 3.8 29.6 1.0 N A:THR15 3.9 27.7 1.0 CG2 A:THR35 4.0 24.7 1.0 CA A:THR35 4.0 28.4 1.0 OD2 A:ASP53 4.1 31.8 1.0 CA A:THR15 4.2 25.9 1.0 O A:HOH418 4.2 27.9 1.0 F2 A:ALF303 4.2 30.4 1.0 OD1 A:ASP53 4.2 26.1 1.0 CG2 A:THR15 4.3 25.9 1.0 O1A A:GDP302 4.3 22.9 1.0 O2B A:GDP302 4.4 29.7 1.0 O A:ARG27 4.5 32.2 1.0 CG A:ASP53 4.6 31.0 1.0 O3A A:GDP302 4.6 30.8 1.0 O A:LEU54 4.7 29.3 1.0 O2A A:GDP302 4.8 27.5 1.0 PA A:GDP302 4.8 32.3 1.0 O A:HOH420 4.9 29.6 1.0 CB A:VAL34 4.9 34.9 1.0 CB A:LYS14 4.9 25.7 1.0 K A:K305 5.0 38.2 1.0 C A:VAL34 5.0 32.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg304 b:25.2 occ:1.00 F3 B:ALF303 2.0 27.1 1.0 OG1 B:THR15 2.1 22.1 1.0 O B:HOH426 2.1 24.4 1.0 O2B B:GDP302 2.1 23.7 1.0 O B:HOH424 2.3 24.2 1.0 OG1 B:THR35 2.4 30.8 1.0 CB B:THR35 3.1 26.4 1.0 CB B:THR15 3.2 25.8 1.0 PB B:GDP302 3.4 25.2 1.0 AL B:ALF303 3.5 27.0 1.0 O3B B:GDP302 3.6 21.7 1.0 F2 B:ALF303 3.7 30.2 1.0 N B:THR15 3.8 25.1 1.0 CG2 B:THR35 4.1 24.0 1.0 N B:THR35 4.1 26.4 1.0 OD2 B:ASP53 4.1 26.3 1.0 CA B:THR15 4.1 24.0 1.0 CA B:THR35 4.2 26.9 1.0 O B:HOH403 4.2 25.8 1.0 O1B B:GDP302 4.2 28.6 1.0 F1 B:ALF303 4.2 28.8 1.0 OD1 B:ASP53 4.3 25.6 1.0 O2A B:GDP302 4.3 25.4 1.0 CG2 B:THR15 4.3 24.5 1.0 O3A B:GDP302 4.5 30.8 1.0 O B:LEU54 4.6 25.4 1.0 CG B:ASP53 4.6 27.5 1.0 O B:ARG27 4.7 24.8 1.0 O1A B:GDP302 4.7 27.2 1.0 PA B:GDP302 4.7 25.4 1.0 CB B:LYS14 4.7 24.1 1.0 CE B:LYS14 4.8 22.4 1.0 C B:LYS14 4.9 28.3 1.0 NZ B:LYS14 5.0 24.1 1.0

S.Batra, B.Prakash. Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- To Be Published.