Magnesium in PDB 7bwt: Sopd-RAB8 Complex Structure

The structure of Sopd-RAB8 Complex Structure, PDB code: 7bwt was solved by K.Jiang, M.Tong, Z.Chen, X.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.33 / 2.30
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	114.66, 114.66, 107.066, 90, 90, 120
R / Rfree (%)	18.8 / 21.5

The binding sites of Magnesium atom in the Sopd-RAB8 Complex Structure (pdb code 7bwt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Sopd-RAB8 Complex Structure, PDB code: 7bwt:

Magnesium binding site 1 out of 1 in the Sopd-RAB8 Complex Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sopd-RAB8 Complex Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:68.8 occ:1.00 O B:HOH319 2.0 60.0 1.0 O B:HOH307 2.0 65.2 1.0 O B:HOH305 2.1 60.9 1.0 O B:HOH309 2.1 55.2 1.0 OG1 B:THR22 2.1 94.7 1.0 O1B B:GDP201 2.1 64.8 1.0 CB B:THR22 3.3 77.1 1.0 PB B:GDP201 3.3 71.3 1.0 O3B B:GDP201 3.4 73.6 1.0 OD2 B:ASP63 3.8 72.0 1.0 O2A B:GDP201 4.0 68.1 1.0 N B:THR22 4.0 61.4 1.0 NZ B:LYS21 4.2 66.5 1.0 CA B:THR22 4.2 65.5 1.0 CG2 B:THR22 4.3 64.2 1.0 O B:HOH334 4.3 96.3 1.0 O2B B:GDP201 4.3 70.4 1.0 O3A B:GDP201 4.4 76.0 1.0 OD1 B:ASP63 4.5 69.4 1.0 CG B:ASP63 4.6 72.3 1.0 PA B:GDP201 4.6 71.3 1.0 O1A B:GDP201 4.7 68.0 1.0 CG2 B:THR40 4.8 142.2 1.0

H.Lian, K.Jiang, M.Tong, Z.Chen, X.Liu, J.Galan, X.Gao. The Salmonella Effector Protein Sopd Targets RAB8 to Positively and Negatively Modulate the Inflammatory Response. Nat Microbiol 2021.
ISSN: ESSN 2058-5276
DOI: 10.1038/S41564-021-00866-3