Magnesium in PDB 7bwv: Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-

The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv was solved by S.Batra, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.63 / 2.35
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.699, 73.614, 156.754, 90, 90, 90
R / Rfree (%)	19.3 / 23.2

The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Aluminium	(Al)	2 atoms
Fluorine	(F)	8 atoms
Potassium	(K)	2 atoms

The binding sites of Magnesium atom in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- (pdb code 7bwv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:30.0 occ:1.00 F1 A:ALF302 1.9 33.5 1.0 OG1 A:THR35 2.0 30.4 1.0 O2B A:GDP301 2.1 31.7 1.0 OG1 A:THR15 2.2 28.6 1.0 O A:HOH425 2.2 31.2 1.0 O A:HOH433 2.3 28.5 1.0 CB A:THR35 2.9 29.2 1.0 CB A:THR15 3.3 30.2 1.0 PB A:GDP301 3.3 31.3 1.0 AL A:ALF302 3.5 37.7 1.0 F4 A:ALF302 3.7 41.9 1.0 O3B A:GDP301 3.7 32.3 1.0 N A:THR35 3.9 37.0 1.0 CG2 A:THR35 3.9 20.9 1.0 N A:THR15 3.9 30.4 1.0 CA A:THR35 4.0 31.3 1.0 F3 A:ALF302 4.0 33.1 1.0 OD2 A:ASP53 4.1 35.4 1.0 O A:HOH412 4.1 28.7 1.0 CA A:THR15 4.2 29.4 1.0 OD1 A:ASP53 4.3 30.4 1.0 CG2 A:THR15 4.4 29.1 1.0 O1B A:GDP301 4.4 32.1 1.0 O3A A:GDP301 4.4 42.1 1.0 O2A A:GDP301 4.5 29.1 1.0 PA A:GDP301 4.6 29.6 1.0 O A:ARG27 4.6 38.4 1.0 CG A:ASP53 4.6 34.0 1.0 O A:LEU54 4.7 26.1 1.0 O A:HOH439 4.8 28.1 1.0 CB A:LYS14 4.9 28.9 1.0 CE A:LYS14 5.0 31.3 1.0 NZ A:LYS14 5.0 29.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg303 b:27.8 occ:1.00 O3B B:GDP301 1.9 28.0 1.0 F2 B:ALF302 2.0 31.6 1.0 OG1 B:THR35 2.1 28.5 1.0 O B:HOH404 2.1 24.0 1.0 OG1 B:THR15 2.1 23.0 1.0 O B:HOH426 2.1 26.4 1.0 CB B:THR35 3.0 25.9 1.0 CB B:THR15 3.2 29.1 1.0 PB B:GDP301 3.3 27.6 1.0 AL B:ALF302 3.5 31.9 1.0 F3 B:ALF302 3.6 33.9 1.0 O1B B:GDP301 3.7 28.9 1.0 N B:THR15 3.8 31.4 1.0 N B:THR35 4.0 31.9 1.0 O1A B:GDP301 4.0 28.3 1.0 OD2 B:ASP53 4.1 32.9 1.0 CG2 B:THR35 4.1 22.3 1.0 O B:HOH416 4.1 25.2 1.0 CA B:THR15 4.1 21.8 1.0 CA B:THR35 4.1 32.3 1.0 F4 B:ALF302 4.1 33.1 1.0 O3A B:GDP301 4.3 31.1 1.0 CG2 B:THR15 4.3 23.3 1.0 OD1 B:ASP53 4.3 25.6 1.0 O2B B:GDP301 4.4 36.0 1.0 PA B:GDP301 4.4 30.9 1.0 O B:ARG27 4.5 29.6 1.0 CG B:ASP53 4.6 30.0 1.0 O B:LEU54 4.8 26.3 1.0 O B:HOH456 4.8 26.8 1.0 CB B:LYS14 4.8 27.4 1.0 CE B:LYS14 4.9 27.8 1.0 C B:LYS14 4.9 29.4 1.0

S.Batra, B.Prakash. Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- To Be Published.