Magnesium in PDB 7c2f: Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex

The structure of Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex, PDB code: 7c2f was solved by R.C.Robinson, C.Akil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.59 / 2.03
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.427, 108.626, 167.522, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 23.1

The binding sites of Magnesium atom in the Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex (pdb code 7c2f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex, PDB code: 7c2f:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:21.9 occ:1.00 O1B A:ATP402 2.0 22.1 1.0 O A:HOH599 2.0 33.0 1.0 O A:HOH673 2.0 23.1 1.0 O A:HOH554 2.1 21.3 1.0 O A:HOH565 2.1 22.0 1.0 O1G A:ATP402 2.2 21.4 1.0 HZ1 A:LYS18 3.4 27.0 1.0 PB A:ATP402 3.4 17.5 1.0 PG A:ATP402 3.6 26.0 1.0 O3B A:ATP402 3.9 27.9 1.0 O A:HOH583 4.0 34.8 1.0 O A:HOH580 4.0 26.2 1.0 O A:HOH613 4.0 31.3 1.0 O2A A:ATP402 4.0 23.2 1.0 HA2 A:GLY13 4.1 26.1 1.0 HA3 A:GLY13 4.1 26.1 1.0 HA3 A:GLY156 4.1 30.3 1.0 OE1 A:GLN137 4.1 27.9 1.0 O3A A:ATP402 4.2 27.9 1.0 O3G A:ATP402 4.2 22.1 1.0 NZ A:LYS18 4.2 22.5 1.0 HG21 A:VAL339 4.3 21.8 1.0 OD2 A:ASP11 4.3 24.2 1.0 OD1 A:ASP11 4.4 21.1 1.0 HZ2 A:LYS18 4.4 27.0 1.0 CD A:GLN137 4.5 26.3 1.0 OD2 A:ASP154 4.5 31.7 1.0 O2B A:ATP402 4.6 30.3 1.0 CA A:GLY13 4.6 21.7 1.0 PA A:ATP402 4.6 14.1 1.0 HG2 A:GLN137 4.6 28.6 1.0 HZ3 A:LYS18 4.7 27.0 1.0 O2G A:ATP402 4.7 22.7 1.0 OD1 A:ASP154 4.7 32.9 1.0 HB3 A:GLN137 4.8 26.3 1.0 CG A:ASP11 4.8 23.8 1.0 HE3 A:LYS18 4.8 21.5 1.0 O A:HOH588 4.9 51.9 1.0 CA A:GLY156 5.0 25.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg403 b:21.6 occ:1.00 O C:HOH624 2.0 29.9 1.0 O C:HOH530 2.0 31.2 1.0 O C:HOH555 2.0 23.9 1.0 O1B C:ATP402 2.0 23.5 1.0 O1G C:ATP402 2.1 28.1 1.0 O C:HOH531 2.2 24.3 1.0 PB C:ATP402 3.4 21.5 1.0 HZ1 C:LYS18 3.5 35.9 1.0 PG C:ATP402 3.5 28.1 1.0 O C:HOH563 3.6 81.2 1.0 O3B C:ATP402 3.9 29.7 1.0 O C:HOH571 4.0 28.3 1.0 O2A C:ATP402 4.1 29.2 1.0 OE1 C:GLN137 4.1 27.9 1.0 O C:HOH612 4.1 24.6 1.0 O C:HOH562 4.1 34.2 1.0 HA2 C:GLY13 4.1 40.8 1.0 HA3 C:GLY156 4.1 35.4 1.0 O3A C:ATP402 4.2 27.1 1.0 O3G C:ATP402 4.2 32.9 1.0 HA3 C:GLY13 4.2 40.8 1.0 HG21 C:VAL339 4.3 28.0 1.0 OD2 C:ASP11 4.3 30.4 1.0 NZ C:LYS18 4.3 29.9 1.0 HZ2 C:LYS18 4.4 35.9 1.0 OD2 C:ASP154 4.5 32.0 1.0 CD C:GLN137 4.5 27.7 1.0 OD1 C:ASP11 4.5 29.2 1.0 HG2 C:GLN137 4.6 34.9 1.0 O2G C:ATP402 4.6 30.6 1.0 O2B C:ATP402 4.6 26.7 1.0 PA C:ATP402 4.6 22.1 1.0 CA C:GLY13 4.6 34.0 1.0 HB3 C:GLN137 4.7 34.2 1.0 OD1 C:ASP154 4.7 30.1 1.0 HZ3 C:LYS18 4.8 35.9 1.0 CG C:ASP11 4.8 30.1 1.0 HE3 C:LYS18 4.9 38.4 1.0 CG C:GLN137 5.0 29.0 1.0 HG11 C:VAL339 5.0 36.9 1.0 CG C:ASP154 5.0 30.3 1.0

R.C.Robinson, C.Akil. Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex To Be Published.