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Magnesium in PDB 7cfg: Structure of the Transmembrane Domain of the Corc MG2+ Transpoter in Complex with MG2+

Protein crystallography data

The structure of Structure of the Transmembrane Domain of the Corc MG2+ Transpoter in Complex with MG2+, PDB code: 7cfg was solved by Y.Huang, F.Jin, M.Hattori, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.33 / 3.20
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 57.57, 83.12, 98.89, 90, 90, 90
R / Rfree (%) 22.7 / 27.9

Other elements in 7cfg:

The structure of Structure of the Transmembrane Domain of the Corc MG2+ Transpoter in Complex with MG2+ also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Transmembrane Domain of the Corc MG2+ Transpoter in Complex with MG2+ (pdb code 7cfg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Transmembrane Domain of the Corc MG2+ Transpoter in Complex with MG2+, PDB code: 7cfg:

Magnesium binding site 1 out of 1 in 7cfg

Go back to Magnesium Binding Sites List in 7cfg
Magnesium binding site 1 out of 1 in the Structure of the Transmembrane Domain of the Corc MG2+ Transpoter in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Transmembrane Domain of the Corc MG2+ Transpoter in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:52.8
occ:1.00
OG A:SER47 2.1 38.6 1.0
OG A:SER43 2.1 38.8 1.0
OE2 A:GLU130 2.1 50.6 1.0
O A:SER43 2.2 43.7 1.0
O A:GLY129 2.2 50.7 1.0
OD1 A:ASN90 2.2 48.9 1.0
C A:SER43 2.9 39.7 1.0
CB A:SER47 3.2 39.5 1.0
CD A:GLU130 3.2 61.8 1.0
CB A:SER43 3.2 43.6 1.0
C A:GLY129 3.3 50.8 1.0
CA A:SER43 3.3 39.7 1.0
CG A:ASN90 3.4 44.6 1.0
OE1 A:GLU130 3.7 58.0 1.0
N A:SER47 3.8 37.5 1.0
N A:ALA44 3.8 41.1 1.0
ND2 A:ASN90 3.9 46.5 1.0
CA A:GLY129 4.0 49.0 1.0
CA A:SER47 4.1 39.6 1.0
CA A:ALA44 4.3 42.2 1.0
ND2 A:ASN94 4.4 41.7 1.0
CG A:GLU130 4.4 59.9 1.0
N A:GLU130 4.4 46.6 1.0
OD1 A:ASN94 4.5 26.2 1.0
CB A:ASN90 4.6 40.8 1.0
CA A:GLU130 4.7 39.2 1.0
N A:SER43 4.8 44.9 1.0
CG A:ASN94 4.9 34.2 1.0
C A:PHE46 4.9 36.6 1.0
CB A:PHE46 4.9 37.5 1.0
C A:ALA44 5.0 39.3 1.0

Reference:

Y.Huang, F.Jin, Y.Funato, Z.Xu, W.Zhu, J.Wang, M.Sun, Y.Zhao, Y.Yu, H.Miki, M.Hattori. Structural Basis For the Mg 2+ Recognition and Regulation of the Corc Mg 2+ Transporter. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 33568487
DOI: 10.1126/SCIADV.ABE6140
Page generated: Wed Oct 2 14:02:16 2024

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