Magnesium in PDB 7cfi: Structure of the Cbs Domain of the Corc MG2+ Transporter in Complex with Atp

The structure of Structure of the Cbs Domain of the Corc MG2+ Transporter in Complex with Atp, PDB code: 7cfi was solved by Y.Huang, F.Jin, M.Hattori, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.65 / 2.45
Space group	F 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.89, 87.3, 201.97, 90, 90, 90
R / Rfree (%)	24.5 / 25.9

The binding sites of Magnesium atom in the Structure of the Cbs Domain of the Corc MG2+ Transporter in Complex with Atp (pdb code 7cfi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the Cbs Domain of the Corc MG2+ Transporter in Complex with Atp, PDB code: 7cfi:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of the Cbs Domain of the Corc MG2+ Transporter in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Cbs Domain of the Corc MG2+ Transporter in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:78.8 occ:1.00 OE2 A:GLU338 2.2 87.0 1.0 OE2 A:GLU342 2.2 91.6 1.0 O A:ILE348 2.9 92.0 1.0 CD A:GLU338 3.3 80.0 1.0 CD A:GLU342 3.3 93.5 1.0 OE1 A:GLU342 3.6 103.5 1.0 C A:ILE348 4.0 88.4 1.0 OE1 A:GLU338 4.0 89.1 1.0 C5' A:ATP401 4.1 62.4 1.0 CG A:GLU338 4.1 75.8 1.0 C4' A:ATP401 4.2 69.7 1.0 N A:ILE348 4.3 92.2 1.0 O3' A:ATP401 4.4 63.6 1.0 CG A:GLU342 4.6 88.3 1.0 C3' A:ATP401 4.6 70.5 1.0 CA A:ILE348 4.6 91.5 1.0 CB A:ILE348 4.9 90.9 1.0

Magnesium binding site 2 out of 2 in the Structure of the Cbs Domain of the Corc MG2+ Transporter in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Cbs Domain of the Corc MG2+ Transporter in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:73.8 occ:1.00 O A:HOH501 2.2 75.8 1.0 O A:HOH508 2.2 85.2 1.0 O2G A:ATP401 2.8 63.3 1.0 O1B A:ATP401 2.9 64.6 1.0 O1A A:ATP401 3.0 71.5 1.0 OE1 A:GLU338 3.3 89.1 1.0 O A:HOH503 3.7 72.0 1.0 PG A:ATP401 4.2 61.7 1.0 PB A:ATP401 4.2 55.3 1.0 CD A:GLU338 4.3 80.0 1.0 PA A:ATP401 4.4 66.7 1.0 O3B A:ATP401 4.5 75.0 1.0 OE2 A:GLU338 4.6 87.0 1.0 O3A A:ATP401 4.7 63.9 1.0 C5' A:ATP401 4.7 62.4 1.0 O1G A:ATP401 4.8 59.0 1.0

Y.Huang, F.Jin, Y.Funato, Z.Xu, W.Zhu, J.Wang, M.Sun, Y.Zhao, Y.Yu, H.Miki, M.Hattori. Structural Basis For the Mg 2+ Recognition and Regulation of the Corc Mg 2+ Transporter. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 33568487
DOI: 10.1126/SCIADV.ABE6140