Magnesium in PDB 7cki: Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp

Enzymatic activity of Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp

All present enzymatic activity of Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp:
6.1.1.2;

Protein crystallography data

The structure of Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp, PDB code: 7cki was solved by G.Lyu, S.Fan, Y.Jin, J.Liu, S.Zou, G.Wu, Z.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.94 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 61.988, 61.988, 218.066, 90, 90, 90
R / Rfree (%) 16.5 / 20.9

Other elements in 7cki:

The structure of Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp also contains other interesting chemical elements:

Potassium (K) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp (pdb code 7cki). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp, PDB code: 7cki:

Magnesium binding site 1 out of 1 in 7cki

Go back to Magnesium Binding Sites List in 7cki
Magnesium binding site 1 out of 1 in the Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:19.1
occ:1.00
 O A:HOH524 2.0 15.6 1.0
O A:HOH546 2.0 17.4 1.0
O A:HOH583 2.1 17.3 1.0
O1A A:ATP404 2.1 19.2 1.0
O1B A:ATP404 2.1 20.1 1.0
O2G A:ATP404 2.2 15.9 1.0
PB A:ATP404 3.2 18.9 1.0
PA A:ATP404 3.3 19.4 1.0
PG A:ATP404 3.4 20.4 1.0
O3B A:ATP404 3.5 22.9 1.0
O3A A:ATP404 3.6 21.9 1.0
O02 A:9E0401 3.8 26.7 1.0
NE2 A:GLN9 3.9 18.4 1.0
NZ A:LYS111 3.9 27.6 1.0
O01 A:9E0401 4.0 21.0 1.0
O5' A:ATP404 4.0 22.8 1.0
O A:HOH536 4.2 15.7 1.0
NZ A:LYS192 4.2 22.8 1.0
O1G A:ATP404 4.2 18.0 1.0
OD2 A:ASP146 4.3 28.9 1.0
C11 A:9E0401 4.3 23.0 1.0
O A:HOH503 4.3 28.3 1.0
NE2 A:GLN107 4.4 19.3 1.0
O A:HOH588 4.4 27.9 1.0
O2B A:ATP404 4.5 21.0 1.0
O3G A:ATP404 4.5 20.1 1.0
CE A:LYS192 4.6 22.6 1.0
O2A A:ATP404 4.6 17.6 1.0
C8 A:ATP404 4.7 23.7 1.0
NE2 A:GLN147 4.8 21.6 1.0

Reference:

G.Lyu, S.Fan, Y.Jin, D.Li, J.Liu, S.Zou, G.Wu, Z.Yang. Crystal Structure of Tryptophanyl-Trna Synthetase From Bacillus Stearothermophilus in Complex with Chuangxinmycin and Atp To Be Published.
Page generated: Sat Aug 21 16:20:57 2021

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