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Magnesium in PDB 7cle: Non-Specific Class-C Acidphosphatase From Sphingobium Sp. Rsms

Protein crystallography data

The structure of Non-Specific Class-C Acidphosphatase From Sphingobium Sp. Rsms, PDB code: 7cle was solved by N.K.Gaur, A.Kumar, S.Sunder, R.Mukhopadhyaya, R.D.Makde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.66 / 2.34
Space group I 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 170.622, 170.622, 170.622, 90, 90, 90
R / Rfree (%) 19.2 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Non-Specific Class-C Acidphosphatase From Sphingobium Sp. Rsms (pdb code 7cle). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Non-Specific Class-C Acidphosphatase From Sphingobium Sp. Rsms, PDB code: 7cle:

Magnesium binding site 1 out of 1 in 7cle

Go back to Magnesium Binding Sites List in 7cle
Magnesium binding site 1 out of 1 in the Non-Specific Class-C Acidphosphatase From Sphingobium Sp. Rsms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Non-Specific Class-C Acidphosphatase From Sphingobium Sp. Rsms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:19.0
occ:1.00
O A:HOH405 2.0 25.4 1.0
OD2 A:ASP87 2.0 26.3 1.0
O A:HOH491 2.1 32.8 1.0
O A:HOH441 2.1 21.1 1.0
OD1 A:ASP208 2.2 27.4 1.0
O A:ASP89 2.2 26.2 1.0
CG A:ASP208 3.1 25.2 1.0
CG A:ASP87 3.1 27.3 1.0
OD2 A:ASP208 3.2 27.4 1.0
C A:ASP89 3.4 26.1 1.0
OD1 A:ASP87 3.5 27.4 1.0
OD2 A:ASP212 4.1 24.6 1.0
OG1 A:THR91 4.1 25.2 1.0
CA A:ASP89 4.1 26.1 1.0
N A:ASP89 4.2 24.6 1.0
O A:HOH514 4.2 46.0 1.0
CB A:ASP89 4.2 26.8 1.0
NE2 A:GLN209 4.2 29.6 1.0
CB A:ASP87 4.3 24.9 1.0
O A:HOH518 4.3 48.4 1.0
OH A:TYR251 4.4 21.7 1.0
N A:GLU90 4.4 23.9 1.0
O A:HOH412 4.5 35.0 1.0
CB A:ASP208 4.5 19.0 1.0
CB A:GLU90 4.6 19.1 1.0
N A:THR91 4.6 22.8 1.0
O A:HOH503 4.6 21.0 1.0
C A:GLU90 4.7 23.2 1.0
CA A:GLU90 4.8 21.7 1.0
OD1 A:ASP212 4.9 26.1 1.0
CG A:ASP212 4.9 26.2 1.0
N A:ASP208 4.9 20.3 1.0
C A:VAL88 4.9 25.4 1.0
CB A:THR91 4.9 23.2 1.0
CG A:GLN209 5.0 24.4 1.0

Reference:

N.K.Gaur, A.Kumar, S.Sunder, R.Mukhopadhyaya, R.D.Makde. Non-Specific Class-C Acidphosphatase From Sphingobium Sp. Rsms To Be Published.
Page generated: Wed Oct 2 14:11:43 2024

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