Magnesium in PDB 7cqq: Gmas in Complex with Amppnp and Metsox
Enzymatic activity of Gmas in Complex with Amppnp and Metsox
All present enzymatic activity of Gmas in Complex with Amppnp and Metsox:
6.3.1.2;
Protein crystallography data
The structure of Gmas in Complex with Amppnp and Metsox, PDB code: 7cqq
was solved by
C.Y.Li,
Y.Z.Zhang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
31.83 /
2.30
|
|
Space group
|
I 2 2 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
115.553,
174.476,
190.125,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.7 /
19.6
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Gmas in Complex with Amppnp and Metsox
(pdb code 7cqq). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the
Gmas in Complex with Amppnp and Metsox, PDB code: 7cqq:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Magnesium binding site 1 out
of 9 in 7cqq
Go back to
Magnesium Binding Sites List in 7cqq
Magnesium binding site 1 out
of 9 in the Gmas in Complex with Amppnp and Metsox
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Gmas in Complex with Amppnp and Metsox within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg501
b:36.6
occ:1.00
|
O3G
|
A:ANP504
|
2.2
|
30.9
|
1.0
|
|
O2A
|
A:ANP504
|
2.2
|
36.5
|
1.0
|
|
O
|
A:HOH609
|
2.2
|
36.0
|
1.0
|
|
OE2
|
A:GLU186
|
2.3
|
33.6
|
1.0
|
|
OE1
|
A:GLU122
|
2.3
|
31.6
|
1.0
|
|
N3B
|
A:ANP504
|
2.7
|
36.5
|
1.0
|
|
CD
|
A:GLU186
|
2.9
|
33.8
|
1.0
|
|
PG
|
A:ANP504
|
2.9
|
36.9
|
1.0
|
|
OE1
|
A:GLU186
|
2.9
|
34.3
|
1.0
|
|
CD
|
A:GLU122
|
3.3
|
32.1
|
1.0
|
|
MG
|
A:MG503
|
3.4
|
33.3
|
1.0
|
|
O
|
A:HOH765
|
3.4
|
36.1
|
1.0
|
|
PA
|
A:ANP504
|
3.6
|
35.8
|
1.0
|
|
CG
|
A:GLU122
|
3.9
|
31.1
|
1.0
|
|
O2G
|
A:ANP504
|
3.9
|
31.4
|
1.0
|
|
OD1
|
A:ASN188
|
3.9
|
33.0
|
1.0
|
|
O
|
A:HOH601
|
3.9
|
37.2
|
1.0
|
|
ND2
|
A:ASN188
|
4.0
|
30.7
|
1.0
|
|
PB
|
A:ANP504
|
4.0
|
32.7
|
1.0
|
|
O3A
|
A:ANP504
|
4.1
|
33.8
|
1.0
|
|
O1B
|
A:ANP504
|
4.1
|
32.1
|
1.0
|
|
MG
|
A:MG502
|
4.1
|
32.4
|
1.0
|
|
O1G
|
A:ANP504
|
4.2
|
34.0
|
1.0
|
|
CB
|
A:GLU122
|
4.3
|
28.7
|
1.0
|
|
CG
|
A:GLU186
|
4.3
|
29.3
|
1.0
|
|
O
|
C:HOH631
|
4.3
|
47.4
|
1.0
|
|
CG
|
A:ASN188
|
4.3
|
34.0
|
1.0
|
|
OE2
|
A:GLU122
|
4.4
|
30.8
|
1.0
|
|
O
|
A:HOH614
|
4.4
|
35.0
|
1.0
|
|
O5'
|
A:ANP504
|
4.5
|
34.3
|
1.0
|
|
O1A
|
A:ANP504
|
4.6
|
34.6
|
1.0
|
|
OE2
|
A:GLU179
|
4.6
|
38.3
|
1.0
|
|
OE
|
A:MSL505
|
4.7
|
30.4
|
1.0
|
|
NE2
|
A:GLN175
|
4.9
|
32.8
|
1.0
|
|
Magnesium binding site 2 out
of 9 in 7cqq
Go back to
Magnesium Binding Sites List in 7cqq
Magnesium binding site 2 out
of 9 in the Gmas in Complex with Amppnp and Metsox
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Gmas in Complex with Amppnp and Metsox within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg502
b:32.4
occ:1.00
|
OE2
|
A:GLU325
|
2.0
|
31.8
|
1.0
|
|
O2G
|
A:ANP504
|
2.1
|
31.4
|
1.0
|
|
OE2
|
A:GLU122
|
2.3
|
30.8
|
1.0
|
|
O1B
|
A:ANP504
|
2.3
|
32.1
|
1.0
|
|
OE1
|
A:GLU122
|
2.3
|
31.6
|
1.0
|
|
ND1
|
A:HIS235
|
2.5
|
27.4
|
1.0
|
|
CD
|
A:GLU122
|
2.6
|
32.1
|
1.0
|
|
PG
|
A:ANP504
|
3.2
|
36.9
|
1.0
|
|
CD
|
A:GLU325
|
3.3
|
29.3
|
1.0
|
|
CG
|
A:HIS235
|
3.3
|
28.7
|
1.0
|
|
PB
|
A:ANP504
|
3.5
|
32.7
|
1.0
|
|
CE1
|
A:HIS235
|
3.5
|
27.0
|
1.0
|
|
CB
|
A:HIS235
|
3.5
|
27.6
|
1.0
|
|
N3B
|
A:ANP504
|
3.6
|
36.5
|
1.0
|
|
O3G
|
A:ANP504
|
3.7
|
30.9
|
1.0
|
|
NE2
|
A:HIS237
|
3.7
|
29.0
|
1.0
|
|
NH1
|
A:ARG327
|
3.7
|
26.1
|
1.0
|
|
O
|
A:HOH765
|
3.9
|
36.1
|
1.0
|
|
OE1
|
A:GLU325
|
4.0
|
31.5
|
1.0
|
|
CG
|
A:GLU122
|
4.1
|
31.1
|
1.0
|
|
MG
|
A:MG501
|
4.1
|
36.6
|
1.0
|
|
NH1
|
A:ARG317
|
4.2
|
28.6
|
1.0
|
|
CG
|
A:GLU325
|
4.2
|
29.0
|
1.0
|
|
O3A
|
A:ANP504
|
4.4
|
33.8
|
1.0
|
|
CD2
|
A:HIS235
|
4.5
|
29.4
|
1.0
|
|
CD2
|
A:HIS237
|
4.5
|
30.2
|
1.0
|
|
O2B
|
A:ANP504
|
4.5
|
41.2
|
1.0
|
|
NE2
|
A:HIS235
|
4.5
|
25.9
|
1.0
|
|
O2A
|
A:ANP504
|
4.6
|
36.5
|
1.0
|
|
O1G
|
A:ANP504
|
4.6
|
34.0
|
1.0
|
|
CB
|
A:GLU122
|
4.6
|
28.7
|
1.0
|
|
CE1
|
A:HIS237
|
4.7
|
33.0
|
1.0
|
|
CZ
|
A:ARG327
|
4.8
|
28.0
|
1.0
|
|
PA
|
A:ANP504
|
4.9
|
35.8
|
1.0
|
|
OE
|
A:MSL505
|
4.9
|
30.4
|
1.0
|
|
O5'
|
A:ANP504
|
4.9
|
34.3
|
1.0
|
|
CA
|
A:HIS235
|
5.0
|
32.4
|
1.0
|
|
Magnesium binding site 3 out
of 9 in 7cqq
Go back to
Magnesium Binding Sites List in 7cqq
Magnesium binding site 3 out
of 9 in the Gmas in Complex with Amppnp and Metsox
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Gmas in Complex with Amppnp and Metsox within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg503
b:33.3
occ:1.00
|
O3G
|
A:ANP504
|
2.3
|
30.9
|
1.0
|
|
OE1
|
A:GLU186
|
2.4
|
34.3
|
1.0
|
|
OE2
|
A:GLU124
|
2.4
|
32.0
|
1.0
|
|
O
|
A:HOH765
|
2.4
|
36.1
|
1.0
|
|
OE2
|
A:GLU179
|
2.4
|
38.3
|
1.0
|
|
OE
|
A:MSL505
|
2.5
|
30.4
|
1.0
|
|
CD
|
A:GLU179
|
3.0
|
33.2
|
1.0
|
|
MG
|
A:MG501
|
3.4
|
36.6
|
1.0
|
|
CD
|
A:GLU124
|
3.4
|
30.5
|
1.0
|
|
CD
|
A:GLU186
|
3.4
|
33.8
|
1.0
|
|
SD
|
A:MSL505
|
3.5
|
30.7
|
1.0
|
|
OE1
|
A:GLU179
|
3.5
|
31.0
|
1.0
|
|
PG
|
A:ANP504
|
3.7
|
36.9
|
1.0
|
|
O
|
A:HOH601
|
3.7
|
37.2
|
1.0
|
|
CG
|
A:GLU179
|
3.8
|
31.0
|
1.0
|
|
OE2
|
A:GLU186
|
3.8
|
33.6
|
1.0
|
|
CG
|
A:GLU124
|
4.0
|
28.6
|
1.0
|
|
O
|
A:HOH614
|
4.0
|
35.0
|
1.0
|
|
CG
|
A:MSL505
|
4.1
|
29.4
|
1.0
|
|
O2G
|
A:ANP504
|
4.2
|
31.4
|
1.0
|
|
O1G
|
A:ANP504
|
4.2
|
34.0
|
1.0
|
|
OE1
|
A:GLU122
|
4.2
|
31.6
|
1.0
|
|
OE1
|
A:GLU124
|
4.3
|
30.1
|
1.0
|
|
NE
|
A:MSL505
|
4.3
|
35.8
|
1.0
|
|
CB
|
A:MSL505
|
4.5
|
25.0
|
1.0
|
|
CE1
|
A:HIS235
|
4.5
|
27.0
|
1.0
|
|
O
|
A:HOH609
|
4.6
|
36.0
|
1.0
|
|
O
|
A:HOH652
|
4.7
|
30.2
|
1.0
|
|
CG
|
A:GLU186
|
4.7
|
29.3
|
1.0
|
|
ND1
|
A:HIS235
|
4.8
|
27.4
|
1.0
|
|
CE
|
A:MSL505
|
4.8
|
22.3
|
1.0
|
|
N3B
|
A:ANP504
|
4.8
|
36.5
|
1.0
|
|
CB
|
A:GLU186
|
4.9
|
28.7
|
1.0
|
|
O
|
A:HOH639
|
5.0
|
30.6
|
1.0
|
|
Magnesium binding site 4 out
of 9 in 7cqq
Go back to
Magnesium Binding Sites List in 7cqq
Magnesium binding site 4 out
of 9 in the Gmas in Complex with Amppnp and Metsox
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Gmas in Complex with Amppnp and Metsox within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg501
b:37.0
occ:1.00
|
O3G
|
B:ANP504
|
2.1
|
34.9
|
1.0
|
|
O2A
|
B:ANP504
|
2.1
|
40.6
|
1.0
|
|
OE2
|
B:GLU186
|
2.2
|
30.7
|
1.0
|
|
OE1
|
B:GLU122
|
2.2
|
34.3
|
1.0
|
|
O
|
B:HOH759
|
2.3
|
38.3
|
1.0
|
|
N3B
|
B:ANP504
|
2.7
|
38.4
|
1.0
|
|
PG
|
B:ANP504
|
2.9
|
38.1
|
1.0
|
|
CD
|
B:GLU186
|
2.9
|
32.3
|
1.0
|
|
OE1
|
B:GLU186
|
3.0
|
31.9
|
1.0
|
|
CD
|
B:GLU122
|
3.2
|
34.4
|
1.0
|
|
O
|
B:HOH745
|
3.3
|
36.3
|
1.0
|
|
MG
|
B:MG503
|
3.5
|
31.1
|
1.0
|
|
PA
|
B:ANP504
|
3.5
|
35.2
|
1.0
|
|
CG
|
B:GLU122
|
3.7
|
31.9
|
1.0
|
|
O2G
|
B:ANP504
|
3.8
|
36.0
|
1.0
|
|
ND2
|
B:ASN188
|
3.9
|
30.5
|
1.0
|
|
OD1
|
B:ASN188
|
4.0
|
35.5
|
1.0
|
|
PB
|
B:ANP504
|
4.0
|
31.7
|
1.0
|
|
MG
|
B:MG502
|
4.0
|
34.8
|
1.0
|
|
O1B
|
B:ANP504
|
4.0
|
35.8
|
1.0
|
|
CB
|
B:GLU122
|
4.0
|
28.2
|
1.0
|
|
O3A
|
B:ANP504
|
4.1
|
38.2
|
1.0
|
|
O
|
B:HOH601
|
4.2
|
35.5
|
1.0
|
|
O1G
|
B:ANP504
|
4.3
|
38.0
|
1.0
|
|
CG
|
B:GLU186
|
4.3
|
30.5
|
1.0
|
|
OE2
|
B:GLU122
|
4.3
|
35.4
|
1.0
|
|
CG
|
B:ASN188
|
4.3
|
31.7
|
1.0
|
|
O5'
|
B:ANP504
|
4.3
|
39.1
|
1.0
|
|
O
|
B:HOH628
|
4.5
|
37.0
|
1.0
|
|
O1A
|
B:ANP504
|
4.6
|
36.6
|
1.0
|
|
OE
|
B:MSL505
|
4.9
|
32.5
|
1.0
|
|
O
|
B:HOH615
|
4.9
|
38.5
|
1.0
|
|
OE2
|
B:GLU179
|
4.9
|
36.7
|
1.0
|
|
Magnesium binding site 5 out
of 9 in 7cqq
Go back to
Magnesium Binding Sites List in 7cqq
Magnesium binding site 5 out
of 9 in the Gmas in Complex with Amppnp and Metsox
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Gmas in Complex with Amppnp and Metsox within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg502
b:34.8
occ:1.00
|
O2G
|
B:ANP504
|
2.1
|
36.0
|
1.0
|
|
OE2
|
B:GLU325
|
2.1
|
35.1
|
1.0
|
|
OE1
|
B:GLU122
|
2.2
|
34.3
|
1.0
|
|
O1B
|
B:ANP504
|
2.3
|
35.8
|
1.0
|
|
OE2
|
B:GLU122
|
2.3
|
35.4
|
1.0
|
|
ND1
|
B:HIS235
|
2.4
|
30.5
|
1.0
|
|
CD
|
B:GLU122
|
2.6
|
34.4
|
1.0
|
|
PG
|
B:ANP504
|
3.2
|
38.1
|
1.0
|
|
CG
|
B:HIS235
|
3.3
|
31.9
|
1.0
|
|
CD
|
B:GLU325
|
3.3
|
31.5
|
1.0
|
|
CE1
|
B:HIS235
|
3.4
|
30.8
|
1.0
|
|
CB
|
B:HIS235
|
3.4
|
31.0
|
1.0
|
|
PB
|
B:ANP504
|
3.5
|
31.7
|
1.0
|
|
N3B
|
B:ANP504
|
3.6
|
38.4
|
1.0
|
|
O3G
|
B:ANP504
|
3.7
|
34.9
|
1.0
|
|
NH1
|
B:ARG327
|
3.7
|
29.8
|
1.0
|
|
NE2
|
B:HIS237
|
3.8
|
28.6
|
1.0
|
|
O
|
B:HOH745
|
3.8
|
36.3
|
1.0
|
|
MG
|
B:MG501
|
4.0
|
37.0
|
1.0
|
|
OE1
|
B:GLU325
|
4.0
|
33.1
|
1.0
|
|
CG
|
B:GLU122
|
4.1
|
31.9
|
1.0
|
|
NH1
|
B:ARG317
|
4.3
|
33.9
|
1.0
|
|
CG
|
B:GLU325
|
4.3
|
31.5
|
1.0
|
|
CD2
|
B:HIS235
|
4.4
|
31.5
|
1.0
|
|
NE2
|
B:HIS235
|
4.5
|
29.4
|
1.0
|
|
O3A
|
B:ANP504
|
4.5
|
38.2
|
1.0
|
|
O2A
|
B:ANP504
|
4.5
|
40.6
|
1.0
|
|
CD2
|
B:HIS237
|
4.5
|
35.6
|
1.0
|
|
O1G
|
B:ANP504
|
4.5
|
38.0
|
1.0
|
|
O2B
|
B:ANP504
|
4.6
|
41.6
|
1.0
|
|
CB
|
B:GLU122
|
4.7
|
28.2
|
1.0
|
|
CZ
|
B:ARG327
|
4.8
|
30.6
|
1.0
|
|
OE
|
B:MSL505
|
4.8
|
32.5
|
1.0
|
|
CE1
|
B:HIS237
|
4.8
|
34.2
|
1.0
|
|
PA
|
B:ANP504
|
4.9
|
35.2
|
1.0
|
|
CA
|
B:HIS235
|
4.9
|
31.9
|
1.0
|
|
O5'
|
B:ANP504
|
5.0
|
39.1
|
1.0
|
|
Magnesium binding site 6 out
of 9 in 7cqq
Go back to
Magnesium Binding Sites List in 7cqq
Magnesium binding site 6 out
of 9 in the Gmas in Complex with Amppnp and Metsox
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Gmas in Complex with Amppnp and Metsox within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg503
b:31.1
occ:1.00
|
OE2
|
B:GLU124
|
2.3
|
35.5
|
1.0
|
|
OE1
|
B:GLU186
|
2.4
|
31.9
|
1.0
|
|
O3G
|
B:ANP504
|
2.4
|
34.9
|
1.0
|
|
O
|
B:HOH745
|
2.4
|
36.3
|
1.0
|
|
OE2
|
B:GLU179
|
2.5
|
36.7
|
1.0
|
|
OE
|
B:MSL505
|
2.6
|
32.5
|
1.0
|
|
CD
|
B:GLU179
|
3.0
|
34.4
|
1.0
|
|
CD
|
B:GLU124
|
3.4
|
31.7
|
1.0
|
|
MG
|
B:MG501
|
3.5
|
37.0
|
1.0
|
|
CD
|
B:GLU186
|
3.5
|
32.3
|
1.0
|
|
OE1
|
B:GLU179
|
3.5
|
31.0
|
1.0
|
|
SD
|
B:MSL505
|
3.6
|
33.0
|
1.0
|
|
PG
|
B:ANP504
|
3.7
|
38.1
|
1.0
|
|
CG
|
B:GLU179
|
3.7
|
33.6
|
1.0
|
|
O
|
B:HOH601
|
3.7
|
35.5
|
1.0
|
|
CG
|
B:GLU124
|
3.9
|
29.9
|
1.0
|
|
OE2
|
B:GLU186
|
3.9
|
30.7
|
1.0
|
|
O
|
B:HOH628
|
4.0
|
37.0
|
1.0
|
|
CG
|
B:MSL505
|
4.1
|
30.4
|
1.0
|
|
O1G
|
B:ANP504
|
4.2
|
38.0
|
1.0
|
|
O2G
|
B:ANP504
|
4.3
|
36.0
|
1.0
|
|
O
|
B:HOH759
|
4.3
|
38.3
|
1.0
|
|
OE1
|
B:GLU122
|
4.3
|
34.3
|
1.0
|
|
NE
|
B:MSL505
|
4.4
|
35.3
|
1.0
|
|
CB
|
B:MSL505
|
4.4
|
32.3
|
1.0
|
|
OE1
|
B:GLU124
|
4.4
|
32.4
|
1.0
|
|
CE1
|
B:HIS235
|
4.5
|
30.8
|
1.0
|
|
CG
|
B:GLU186
|
4.7
|
30.5
|
1.0
|
|
ND1
|
B:HIS235
|
4.8
|
30.5
|
1.0
|
|
CB
|
B:GLU186
|
4.8
|
31.7
|
1.0
|
|
O
|
B:HOH621
|
4.8
|
35.0
|
1.0
|
|
N3B
|
B:ANP504
|
4.9
|
38.4
|
1.0
|
|
CE
|
B:MSL505
|
4.9
|
22.4
|
1.0
|
|
Magnesium binding site 7 out
of 9 in 7cqq
Go back to
Magnesium Binding Sites List in 7cqq
Magnesium binding site 7 out
of 9 in the Gmas in Complex with Amppnp and Metsox
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Gmas in Complex with Amppnp and Metsox within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg501
b:33.5
occ:1.00
|
O3G
|
C:ANP504
|
2.1
|
32.7
|
1.0
|
|
O2A
|
C:ANP504
|
2.1
|
37.0
|
1.0
|
|
OE2
|
C:GLU186
|
2.3
|
31.9
|
1.0
|
|
OE1
|
C:GLU122
|
2.3
|
30.7
|
1.0
|
|
O
|
C:HOH750
|
2.3
|
35.4
|
1.0
|
|
N3B
|
C:ANP504
|
2.7
|
33.2
|
1.0
|
|
PG
|
C:ANP504
|
2.9
|
36.3
|
1.0
|
|
CD
|
C:GLU186
|
2.9
|
31.6
|
1.0
|
|
OE1
|
C:GLU186
|
3.0
|
28.5
|
1.0
|
|
CD
|
C:GLU122
|
3.3
|
31.7
|
1.0
|
|
PA
|
C:ANP504
|
3.4
|
36.0
|
1.0
|
|
O
|
C:HOH756
|
3.6
|
36.2
|
1.0
|
|
MG
|
C:MG503
|
3.6
|
30.1
|
1.0
|
|
O2G
|
C:ANP504
|
3.7
|
34.3
|
1.0
|
|
ND2
|
C:ASN188
|
3.8
|
31.1
|
1.0
|
|
CG
|
C:GLU122
|
3.8
|
27.3
|
1.0
|
|
PB
|
C:ANP504
|
3.9
|
32.4
|
1.0
|
|
O1B
|
C:ANP504
|
3.9
|
30.6
|
1.0
|
|
O3A
|
C:ANP504
|
4.0
|
37.0
|
1.0
|
|
MG
|
C:MG502
|
4.0
|
29.7
|
1.0
|
|
OD1
|
C:ASN188
|
4.0
|
32.9
|
1.0
|
|
O
|
C:HOH604
|
4.1
|
35.9
|
1.0
|
|
CB
|
C:GLU122
|
4.2
|
28.3
|
1.0
|
|
O1G
|
C:ANP504
|
4.2
|
31.2
|
1.0
|
|
O5'
|
C:ANP504
|
4.3
|
35.2
|
1.0
|
|
CG
|
C:ASN188
|
4.3
|
31.6
|
1.0
|
|
CG
|
C:GLU186
|
4.3
|
27.5
|
1.0
|
|
OE2
|
C:GLU122
|
4.4
|
36.7
|
1.0
|
|
O
|
C:HOH614
|
4.5
|
38.5
|
1.0
|
|
O1A
|
C:ANP504
|
4.5
|
36.6
|
1.0
|
|
OE2
|
C:GLU179
|
4.8
|
34.1
|
1.0
|
|
NE2
|
C:GLN175
|
4.9
|
35.2
|
1.0
|
|
OE
|
C:MSL505
|
4.9
|
33.4
|
1.0
|
|
Magnesium binding site 8 out
of 9 in 7cqq
Go back to
Magnesium Binding Sites List in 7cqq
Magnesium binding site 8 out
of 9 in the Gmas in Complex with Amppnp and Metsox
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Gmas in Complex with Amppnp and Metsox within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg502
b:29.7
occ:1.00
|
OE2
|
C:GLU325
|
2.1
|
33.7
|
1.0
|
|
O2G
|
C:ANP504
|
2.2
|
34.3
|
1.0
|
|
OE1
|
C:GLU122
|
2.3
|
30.7
|
1.0
|
|
O1B
|
C:ANP504
|
2.3
|
30.6
|
1.0
|
|
OE2
|
C:GLU122
|
2.3
|
36.7
|
1.0
|
|
ND1
|
C:HIS235
|
2.3
|
28.3
|
1.0
|
|
CD
|
C:GLU122
|
2.6
|
31.7
|
1.0
|
|
CG
|
C:HIS235
|
3.2
|
28.3
|
1.0
|
|
PG
|
C:ANP504
|
3.3
|
36.3
|
1.0
|
|
CE1
|
C:HIS235
|
3.3
|
28.9
|
1.0
|
|
CD
|
C:GLU325
|
3.3
|
28.9
|
1.0
|
|
CB
|
C:HIS235
|
3.4
|
27.9
|
1.0
|
|
PB
|
C:ANP504
|
3.5
|
32.4
|
1.0
|
|
O3G
|
C:ANP504
|
3.7
|
32.7
|
1.0
|
|
NH1
|
C:ARG327
|
3.7
|
31.0
|
1.0
|
|
N3B
|
C:ANP504
|
3.7
|
33.2
|
1.0
|
|
NE2
|
C:HIS237
|
3.8
|
33.6
|
1.0
|
|
O
|
C:HOH756
|
4.0
|
36.2
|
1.0
|
|
MG
|
C:MG501
|
4.0
|
33.5
|
1.0
|
|
CG
|
C:GLU122
|
4.0
|
27.3
|
1.0
|
|
OE1
|
C:GLU325
|
4.1
|
30.9
|
1.0
|
|
CG
|
C:GLU325
|
4.2
|
31.2
|
1.0
|
|
CD2
|
C:HIS235
|
4.3
|
29.6
|
1.0
|
|
NE2
|
C:HIS235
|
4.4
|
29.4
|
1.0
|
|
NH1
|
C:ARG317
|
4.4
|
31.6
|
1.0
|
|
O3A
|
C:ANP504
|
4.5
|
37.0
|
1.0
|
|
CD2
|
C:HIS237
|
4.5
|
31.8
|
1.0
|
|
O2B
|
C:ANP504
|
4.6
|
36.4
|
1.0
|
|
CB
|
C:GLU122
|
4.6
|
28.3
|
1.0
|
|
O1G
|
C:ANP504
|
4.7
|
31.2
|
1.0
|
|
O2A
|
C:ANP504
|
4.7
|
37.0
|
1.0
|
|
OE
|
C:MSL505
|
4.9
|
33.4
|
1.0
|
|
CA
|
C:HIS235
|
4.9
|
31.6
|
1.0
|
|
CZ
|
C:ARG327
|
4.9
|
33.0
|
1.0
|
|
CE1
|
C:HIS237
|
4.9
|
33.8
|
1.0
|
|
PA
|
C:ANP504
|
4.9
|
36.0
|
1.0
|
|
Magnesium binding site 9 out
of 9 in 7cqq
Go back to
Magnesium Binding Sites List in 7cqq
Magnesium binding site 9 out
of 9 in the Gmas in Complex with Amppnp and Metsox
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Gmas in Complex with Amppnp and Metsox within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg503
b:30.1
occ:1.00
|
OE1
|
C:GLU186
|
2.3
|
28.5
|
1.0
|
|
O
|
C:HOH756
|
2.3
|
36.2
|
1.0
|
|
OE2
|
C:GLU124
|
2.4
|
34.9
|
1.0
|
|
OE2
|
C:GLU179
|
2.4
|
34.1
|
1.0
|
|
O3G
|
C:ANP504
|
2.4
|
32.7
|
1.0
|
|
OE
|
C:MSL505
|
2.6
|
33.4
|
1.0
|
|
CD
|
C:GLU179
|
3.0
|
31.5
|
1.0
|
|
CD
|
C:GLU124
|
3.3
|
31.2
|
1.0
|
|
CD
|
C:GLU186
|
3.4
|
31.6
|
1.0
|
|
SD
|
C:MSL505
|
3.6
|
32.0
|
1.0
|
|
MG
|
C:MG501
|
3.6
|
33.5
|
1.0
|
|
OE1
|
C:GLU179
|
3.6
|
32.4
|
1.0
|
|
PG
|
C:ANP504
|
3.7
|
36.3
|
1.0
|
|
O
|
C:HOH604
|
3.7
|
35.9
|
1.0
|
|
CG
|
C:GLU179
|
3.8
|
30.8
|
1.0
|
|
CG
|
C:GLU124
|
3.8
|
26.9
|
1.0
|
|
OE2
|
C:GLU186
|
3.9
|
31.9
|
1.0
|
|
CG
|
C:MSL505
|
3.9
|
28.8
|
1.0
|
|
O
|
C:HOH614
|
4.0
|
38.5
|
1.0
|
|
O1G
|
C:ANP504
|
4.1
|
31.2
|
1.0
|
|
O2G
|
C:ANP504
|
4.2
|
34.3
|
1.0
|
|
OE1
|
C:GLU124
|
4.3
|
32.0
|
1.0
|
|
NE
|
C:MSL505
|
4.3
|
33.3
|
1.0
|
|
CB
|
C:MSL505
|
4.3
|
28.0
|
1.0
|
|
CE1
|
C:HIS235
|
4.4
|
28.9
|
1.0
|
|
O
|
C:HOH750
|
4.5
|
35.4
|
1.0
|
|
OE1
|
C:GLU122
|
4.5
|
30.7
|
1.0
|
|
CG
|
C:GLU186
|
4.6
|
27.5
|
1.0
|
|
CB
|
C:GLU186
|
4.8
|
29.9
|
1.0
|
|
ND1
|
C:HIS235
|
4.8
|
28.3
|
1.0
|
|
O
|
C:HOH621
|
4.9
|
33.0
|
1.0
|
|
CE
|
C:MSL505
|
5.0
|
24.8
|
1.0
|
|
N3B
|
C:ANP504
|
5.0
|
33.2
|
1.0
|
|
Reference:
N.Wang,
X.L.Chen,
C.Gao,
M.Peng,
P.Wang,
N.Zhang,
F.Li,
G.P.Yang,
Q.T.Shen,
S.Li,
Y.Chen,
Y.Z.Zhang,
C.Y.Li.
Crystal Structures of Gamma-Glutamylmethylamide Synthetase Provide Insight Into Bacterial Metabolism of Oceanic Monomethylamine. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 33199371
DOI: 10.1074/JBC.RA120.015952
Page generated: Wed Oct 2 14:19:52 2024
|
