Magnesium in PDB 7cqu: Gmas/Adp/Metsox-P Complex
Enzymatic activity of Gmas/Adp/Metsox-P Complex
All present enzymatic activity of Gmas/Adp/Metsox-P Complex:
6.3.1.2;
Protein crystallography data
The structure of Gmas/Adp/Metsox-P Complex, PDB code: 7cqu
was solved by
C.Y.Li,
Y.Z.Zhang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
36.90 /
2.06
|
|
Space group
|
I 2 2 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
116.598,
174.727,
190.618,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
16.3 /
20.2
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Gmas/Adp/Metsox-P Complex
(pdb code 7cqu). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the
Gmas/Adp/Metsox-P Complex, PDB code: 7cqu:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Magnesium binding site 1 out
of 9 in 7cqu
Go back to
Magnesium Binding Sites List in 7cqu
Magnesium binding site 1 out
of 9 in the Gmas/Adp/Metsox-P Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Gmas/Adp/Metsox-P Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg501
b:17.8
occ:1.00
|
O2A
|
A:P3S505
|
2.1
|
12.3
|
1.0
|
|
O1A
|
A:ADP504
|
2.1
|
19.9
|
1.0
|
|
OE1
|
A:GLU122
|
2.2
|
17.2
|
1.0
|
|
OE2
|
A:GLU186
|
2.2
|
18.0
|
1.0
|
|
O
|
A:HOH868
|
2.2
|
19.3
|
1.0
|
|
O2B
|
A:ADP504
|
2.3
|
20.3
|
1.0
|
|
CD
|
A:GLU186
|
3.1
|
19.6
|
1.0
|
|
CD
|
A:GLU122
|
3.2
|
18.6
|
1.0
|
|
OE1
|
A:GLU186
|
3.3
|
17.7
|
1.0
|
|
PA
|
A:P3S505
|
3.3
|
19.1
|
1.0
|
|
PB
|
A:ADP504
|
3.4
|
18.4
|
1.0
|
|
PA
|
A:ADP504
|
3.4
|
20.4
|
1.0
|
|
O
|
A:HOH764
|
3.5
|
14.6
|
1.0
|
|
MG
|
A:MG503
|
3.5
|
20.5
|
1.0
|
|
O1A
|
A:P3S505
|
3.7
|
19.9
|
1.0
|
|
CG
|
A:GLU122
|
3.7
|
15.7
|
1.0
|
|
O3A
|
A:ADP504
|
3.7
|
21.5
|
1.0
|
|
MG
|
A:MG502
|
3.8
|
18.7
|
1.0
|
|
O1B
|
A:ADP504
|
3.9
|
18.3
|
1.0
|
|
ND2
|
A:ASN188
|
4.0
|
13.9
|
1.0
|
|
O
|
A:HOH815
|
4.0
|
21.5
|
1.0
|
|
O
|
A:HOH626
|
4.0
|
15.3
|
1.0
|
|
OD1
|
A:ASN188
|
4.2
|
21.9
|
1.0
|
|
O3A
|
A:P3S505
|
4.2
|
17.8
|
1.0
|
|
OE2
|
A:GLU122
|
4.2
|
17.9
|
1.0
|
|
CB
|
A:GLU122
|
4.2
|
14.7
|
1.0
|
|
O2A
|
A:ADP504
|
4.4
|
17.5
|
1.0
|
|
NE
|
A:P3S505
|
4.4
|
15.4
|
1.0
|
|
CG
|
A:GLU186
|
4.4
|
18.8
|
1.0
|
|
O
|
A:HOH688
|
4.4
|
17.7
|
1.0
|
|
O5'
|
A:ADP504
|
4.5
|
22.6
|
1.0
|
|
CG
|
A:ASN188
|
4.5
|
17.6
|
1.0
|
|
O3B
|
A:ADP504
|
4.7
|
18.1
|
1.0
|
|
OE2
|
A:GLU179
|
4.8
|
16.6
|
1.0
|
|
Magnesium binding site 2 out
of 9 in 7cqu
Go back to
Magnesium Binding Sites List in 7cqu
Magnesium binding site 2 out
of 9 in the Gmas/Adp/Metsox-P Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Gmas/Adp/Metsox-P Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg502
b:18.7
occ:1.00
|
OE2
|
A:GLU325
|
2.1
|
18.6
|
1.0
|
|
O1A
|
A:P3S505
|
2.1
|
19.9
|
1.0
|
|
OE1
|
A:GLU122
|
2.2
|
17.2
|
1.0
|
|
O1B
|
A:ADP504
|
2.2
|
18.3
|
1.0
|
|
OE2
|
A:GLU122
|
2.3
|
17.9
|
1.0
|
|
ND1
|
A:HIS235
|
2.5
|
16.2
|
1.0
|
|
CD
|
A:GLU122
|
2.6
|
18.6
|
1.0
|
|
CD
|
A:GLU325
|
3.3
|
17.5
|
1.0
|
|
PA
|
A:P3S505
|
3.4
|
19.1
|
1.0
|
|
PB
|
A:ADP504
|
3.4
|
18.4
|
1.0
|
|
CE1
|
A:HIS235
|
3.4
|
15.0
|
1.0
|
|
CG
|
A:HIS235
|
3.4
|
16.4
|
1.0
|
|
O2B
|
A:ADP504
|
3.6
|
20.3
|
1.0
|
|
CB
|
A:HIS235
|
3.7
|
16.6
|
1.0
|
|
O2A
|
A:P3S505
|
3.7
|
12.3
|
1.0
|
|
NH1
|
A:ARG327
|
3.7
|
15.5
|
1.0
|
|
O
|
A:HOH764
|
3.8
|
14.6
|
1.0
|
|
NE2
|
A:HIS237
|
3.8
|
15.4
|
1.0
|
|
MG
|
A:MG501
|
3.8
|
17.8
|
1.0
|
|
NH1
|
A:ARG317
|
4.0
|
18.6
|
1.0
|
|
OE1
|
A:GLU325
|
4.0
|
17.5
|
1.0
|
|
CG
|
A:GLU122
|
4.1
|
15.7
|
1.0
|
|
O3A
|
A:ADP504
|
4.1
|
21.5
|
1.0
|
|
CG
|
A:GLU325
|
4.3
|
17.1
|
1.0
|
|
NE
|
A:P3S505
|
4.3
|
15.4
|
1.0
|
|
O3A
|
A:P3S505
|
4.4
|
17.8
|
1.0
|
|
NE2
|
A:HIS235
|
4.5
|
15.2
|
1.0
|
|
CD2
|
A:HIS237
|
4.5
|
17.6
|
1.0
|
|
O3B
|
A:ADP504
|
4.5
|
18.1
|
1.0
|
|
CD2
|
A:HIS235
|
4.5
|
16.1
|
1.0
|
|
O1A
|
A:ADP504
|
4.6
|
19.9
|
1.0
|
|
CB
|
A:GLU122
|
4.7
|
14.7
|
1.0
|
|
CE1
|
A:HIS237
|
4.8
|
19.9
|
1.0
|
|
CZ
|
A:ARG327
|
4.9
|
16.5
|
1.0
|
|
PA
|
A:ADP504
|
4.9
|
20.4
|
1.0
|
|
Magnesium binding site 3 out
of 9 in 7cqu
Go back to
Magnesium Binding Sites List in 7cqu
Magnesium binding site 3 out
of 9 in the Gmas/Adp/Metsox-P Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Gmas/Adp/Metsox-P Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg503
b:20.5
occ:1.00
|
OE1
|
A:GLU186
|
2.0
|
17.7
|
1.0
|
|
OE2
|
A:GLU124
|
2.1
|
16.5
|
1.0
|
|
OE2
|
A:GLU179
|
2.2
|
16.6
|
1.0
|
|
O2A
|
A:P3S505
|
2.3
|
12.3
|
1.0
|
|
O
|
A:HOH764
|
2.3
|
14.6
|
1.0
|
|
NE
|
A:P3S505
|
2.4
|
15.4
|
1.0
|
|
PA
|
A:P3S505
|
3.0
|
19.1
|
1.0
|
|
CD
|
A:GLU179
|
3.0
|
17.5
|
1.0
|
|
CD
|
A:GLU186
|
3.1
|
19.6
|
1.0
|
|
CD
|
A:GLU124
|
3.1
|
15.8
|
1.0
|
|
OE2
|
A:GLU186
|
3.5
|
18.0
|
1.0
|
|
MG
|
A:MG501
|
3.5
|
17.8
|
1.0
|
|
CG
|
A:GLU124
|
3.6
|
13.3
|
1.0
|
|
SD
|
A:P3S505
|
3.6
|
15.5
|
1.0
|
|
O
|
A:HOH626
|
3.7
|
15.3
|
1.0
|
|
CG
|
A:GLU179
|
3.7
|
15.9
|
1.0
|
|
OE1
|
A:GLU179
|
3.8
|
14.8
|
1.0
|
|
O1A
|
A:P3S505
|
4.0
|
19.9
|
1.0
|
|
CG
|
A:P3S505
|
4.1
|
13.4
|
1.0
|
|
O3A
|
A:P3S505
|
4.1
|
17.8
|
1.0
|
|
OE1
|
A:GLU124
|
4.1
|
17.4
|
1.0
|
|
OE1
|
A:GLU122
|
4.1
|
17.2
|
1.0
|
|
CE
|
A:P3S505
|
4.2
|
15.2
|
1.0
|
|
CG
|
A:GLU186
|
4.4
|
18.8
|
1.0
|
|
O
|
A:HOH868
|
4.4
|
19.3
|
1.0
|
|
CB
|
A:P3S505
|
4.4
|
14.8
|
1.0
|
|
O
|
A:HOH697
|
4.5
|
18.3
|
1.0
|
|
CE1
|
A:HIS235
|
4.5
|
15.0
|
1.0
|
|
CB
|
A:GLU186
|
4.5
|
21.0
|
1.0
|
|
O
|
A:HOH688
|
4.7
|
17.7
|
1.0
|
|
ND1
|
A:HIS235
|
4.8
|
16.2
|
1.0
|
|
OE
|
A:P3S505
|
4.9
|
16.2
|
1.0
|
|
Magnesium binding site 4 out
of 9 in 7cqu
Go back to
Magnesium Binding Sites List in 7cqu
Magnesium binding site 4 out
of 9 in the Gmas/Adp/Metsox-P Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Gmas/Adp/Metsox-P Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg501
b:18.1
occ:1.00
|
O2A
|
B:P3S505
|
2.0
|
15.5
|
1.0
|
|
O2A
|
B:ADP504
|
2.1
|
21.6
|
1.0
|
|
OE1
|
B:GLU122
|
2.2
|
18.3
|
1.0
|
|
O2B
|
B:ADP504
|
2.2
|
17.9
|
1.0
|
|
OE2
|
B:GLU186
|
2.3
|
17.2
|
1.0
|
|
O
|
B:HOH842
|
2.3
|
20.8
|
1.0
|
|
CD
|
B:GLU186
|
3.1
|
15.2
|
1.0
|
|
PB
|
B:ADP504
|
3.3
|
19.6
|
1.0
|
|
CD
|
B:GLU122
|
3.3
|
18.4
|
1.0
|
|
PA
|
B:ADP504
|
3.3
|
21.7
|
1.0
|
|
PA
|
B:P3S505
|
3.3
|
18.1
|
1.0
|
|
OE1
|
B:GLU186
|
3.4
|
14.8
|
1.0
|
|
O3A
|
B:ADP504
|
3.6
|
20.2
|
1.0
|
|
MG
|
B:MG503
|
3.6
|
18.8
|
1.0
|
|
O
|
B:HOH830
|
3.6
|
13.6
|
1.0
|
|
O1A
|
B:P3S505
|
3.7
|
15.6
|
1.0
|
|
O1B
|
B:ADP504
|
3.7
|
19.5
|
1.0
|
|
MG
|
B:MG502
|
3.8
|
16.4
|
1.0
|
|
O
|
B:HOH769
|
3.8
|
18.7
|
1.0
|
|
CG
|
B:GLU122
|
3.9
|
17.9
|
1.0
|
|
ND2
|
B:ASN188
|
4.0
|
13.0
|
1.0
|
|
O
|
B:HOH614
|
4.0
|
14.6
|
1.0
|
|
OD1
|
B:ASN188
|
4.1
|
18.0
|
1.0
|
|
O3A
|
B:P3S505
|
4.1
|
17.5
|
1.0
|
|
OE2
|
B:GLU122
|
4.3
|
18.3
|
1.0
|
|
O1A
|
B:ADP504
|
4.3
|
15.1
|
1.0
|
|
CB
|
B:GLU122
|
4.3
|
14.7
|
1.0
|
|
O5'
|
B:ADP504
|
4.4
|
21.9
|
1.0
|
|
CG
|
B:ASN188
|
4.4
|
16.4
|
1.0
|
|
O
|
B:HOH618
|
4.4
|
15.0
|
1.0
|
|
NE
|
B:P3S505
|
4.4
|
15.2
|
1.0
|
|
CG
|
B:GLU186
|
4.5
|
14.3
|
1.0
|
|
O3B
|
B:ADP504
|
4.5
|
17.9
|
1.0
|
|
OE2
|
B:GLU179
|
4.7
|
18.1
|
1.0
|
|
NE2
|
B:GLN175
|
4.9
|
17.8
|
1.0
|
|
Magnesium binding site 5 out
of 9 in 7cqu
Go back to
Magnesium Binding Sites List in 7cqu
Magnesium binding site 5 out
of 9 in the Gmas/Adp/Metsox-P Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Gmas/Adp/Metsox-P Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg502
b:16.4
occ:1.00
|
OE2
|
B:GLU325
|
2.1
|
20.6
|
1.0
|
|
O1A
|
B:P3S505
|
2.1
|
15.6
|
1.0
|
|
O1B
|
B:ADP504
|
2.1
|
19.5
|
1.0
|
|
OE1
|
B:GLU122
|
2.2
|
18.3
|
1.0
|
|
OE2
|
B:GLU122
|
2.3
|
18.3
|
1.0
|
|
ND1
|
B:HIS235
|
2.4
|
13.6
|
1.0
|
|
CD
|
B:GLU122
|
2.6
|
18.4
|
1.0
|
|
CE1
|
B:HIS235
|
3.2
|
14.4
|
1.0
|
|
CD
|
B:GLU325
|
3.3
|
18.2
|
1.0
|
|
PB
|
B:ADP504
|
3.4
|
19.6
|
1.0
|
|
CG
|
B:HIS235
|
3.4
|
13.8
|
1.0
|
|
PA
|
B:P3S505
|
3.4
|
18.1
|
1.0
|
|
O2B
|
B:ADP504
|
3.6
|
17.9
|
1.0
|
|
O2A
|
B:P3S505
|
3.6
|
15.5
|
1.0
|
|
O
|
B:HOH830
|
3.7
|
13.6
|
1.0
|
|
CB
|
B:HIS235
|
3.7
|
13.1
|
1.0
|
|
MG
|
B:MG501
|
3.8
|
18.1
|
1.0
|
|
NH1
|
B:ARG327
|
3.8
|
14.8
|
1.0
|
|
NE2
|
B:HIS237
|
3.9
|
19.1
|
1.0
|
|
NH1
|
B:ARG317
|
4.0
|
16.6
|
1.0
|
|
OE1
|
B:GLU325
|
4.0
|
18.6
|
1.0
|
|
CG
|
B:GLU122
|
4.0
|
17.9
|
1.0
|
|
O3A
|
B:ADP504
|
4.1
|
20.2
|
1.0
|
|
NE
|
B:P3S505
|
4.3
|
15.2
|
1.0
|
|
CG
|
B:GLU325
|
4.3
|
17.7
|
1.0
|
|
NE2
|
B:HIS235
|
4.4
|
13.3
|
1.0
|
|
CD2
|
B:HIS235
|
4.5
|
13.5
|
1.0
|
|
O3A
|
B:P3S505
|
4.5
|
17.5
|
1.0
|
|
O3B
|
B:ADP504
|
4.5
|
17.9
|
1.0
|
|
CD2
|
B:HIS237
|
4.6
|
18.4
|
1.0
|
|
CB
|
B:GLU122
|
4.6
|
14.7
|
1.0
|
|
O2A
|
B:ADP504
|
4.7
|
21.6
|
1.0
|
|
CZ
|
B:ARG327
|
4.9
|
18.6
|
1.0
|
|
CE1
|
B:HIS237
|
4.9
|
20.8
|
1.0
|
|
MG
|
B:MG503
|
5.0
|
18.8
|
1.0
|
|
PA
|
B:ADP504
|
5.0
|
21.7
|
1.0
|
|
Magnesium binding site 6 out
of 9 in 7cqu
Go back to
Magnesium Binding Sites List in 7cqu
Magnesium binding site 6 out
of 9 in the Gmas/Adp/Metsox-P Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Gmas/Adp/Metsox-P Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg503
b:18.8
occ:1.00
|
OE1
|
B:GLU186
|
2.0
|
14.8
|
1.0
|
|
OE2
|
B:GLU179
|
2.2
|
18.1
|
1.0
|
|
O
|
B:HOH830
|
2.2
|
13.6
|
1.0
|
|
OE2
|
B:GLU124
|
2.2
|
16.3
|
1.0
|
|
O2A
|
B:P3S505
|
2.3
|
15.5
|
1.0
|
|
NE
|
B:P3S505
|
2.4
|
15.2
|
1.0
|
|
PA
|
B:P3S505
|
3.0
|
18.1
|
1.0
|
|
CD
|
B:GLU179
|
3.0
|
17.1
|
1.0
|
|
CD
|
B:GLU186
|
3.1
|
15.2
|
1.0
|
|
CD
|
B:GLU124
|
3.1
|
17.3
|
1.0
|
|
OE2
|
B:GLU186
|
3.5
|
17.2
|
1.0
|
|
CG
|
B:GLU124
|
3.6
|
13.2
|
1.0
|
|
MG
|
B:MG501
|
3.6
|
18.1
|
1.0
|
|
SD
|
B:P3S505
|
3.7
|
16.0
|
1.0
|
|
CG
|
B:GLU179
|
3.7
|
15.2
|
1.0
|
|
OE1
|
B:GLU179
|
3.8
|
15.5
|
1.0
|
|
O
|
B:HOH614
|
3.8
|
14.6
|
1.0
|
|
O1A
|
B:P3S505
|
3.9
|
15.6
|
1.0
|
|
CG
|
B:P3S505
|
4.0
|
14.6
|
1.0
|
|
O3A
|
B:P3S505
|
4.1
|
17.5
|
1.0
|
|
OE1
|
B:GLU124
|
4.1
|
16.2
|
1.0
|
|
OE1
|
B:GLU122
|
4.1
|
18.3
|
1.0
|
|
CE
|
B:P3S505
|
4.2
|
15.9
|
1.0
|
|
CG
|
B:GLU186
|
4.3
|
14.3
|
1.0
|
|
CB
|
B:P3S505
|
4.4
|
15.9
|
1.0
|
|
CE1
|
B:HIS235
|
4.5
|
14.4
|
1.0
|
|
O
|
B:HOH842
|
4.5
|
20.8
|
1.0
|
|
CB
|
B:GLU186
|
4.5
|
17.7
|
1.0
|
|
O
|
B:HOH661
|
4.6
|
17.3
|
1.0
|
|
ND1
|
B:HIS235
|
4.8
|
13.6
|
1.0
|
|
O
|
B:HOH618
|
4.8
|
15.0
|
1.0
|
|
OE
|
B:P3S505
|
4.9
|
15.9
|
1.0
|
|
MG
|
B:MG502
|
5.0
|
16.4
|
1.0
|
|
Magnesium binding site 7 out
of 9 in 7cqu
Go back to
Magnesium Binding Sites List in 7cqu
Magnesium binding site 7 out
of 9 in the Gmas/Adp/Metsox-P Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Gmas/Adp/Metsox-P Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg501
b:16.6
occ:1.00
|
O3A
|
C:P3S505
|
2.0
|
11.9
|
1.0
|
|
OE1
|
C:GLU122
|
2.1
|
16.8
|
1.0
|
|
OE2
|
C:GLU186
|
2.2
|
16.0
|
1.0
|
|
O2B
|
C:ADP504
|
2.2
|
17.2
|
1.0
|
|
O2A
|
C:ADP504
|
2.2
|
17.3
|
1.0
|
|
O
|
C:HOH810
|
2.3
|
19.9
|
1.0
|
|
CD
|
C:GLU186
|
3.1
|
17.5
|
1.0
|
|
CD
|
C:GLU122
|
3.1
|
16.5
|
1.0
|
|
OE1
|
C:GLU186
|
3.3
|
15.6
|
1.0
|
|
PB
|
C:ADP504
|
3.3
|
21.2
|
1.0
|
|
PA
|
C:P3S505
|
3.3
|
17.4
|
1.0
|
|
PA
|
C:ADP504
|
3.4
|
17.7
|
1.0
|
|
MG
|
C:MG503
|
3.5
|
18.0
|
1.0
|
|
O
|
C:HOH811
|
3.6
|
13.4
|
1.0
|
|
O3A
|
C:ADP504
|
3.7
|
19.5
|
1.0
|
|
O2A
|
C:P3S505
|
3.7
|
16.1
|
1.0
|
|
O3B
|
C:ADP504
|
3.8
|
17.4
|
1.0
|
|
MG
|
C:MG502
|
3.8
|
17.8
|
1.0
|
|
CG
|
C:GLU122
|
3.8
|
14.4
|
1.0
|
|
O
|
C:HOH756
|
3.9
|
19.0
|
1.0
|
|
O
|
C:HOH613
|
4.0
|
17.1
|
1.0
|
|
OD1
|
C:ASN188
|
4.0
|
21.4
|
1.0
|
|
ND2
|
C:ASN188
|
4.0
|
14.1
|
1.0
|
|
O1A
|
C:P3S505
|
4.1
|
17.2
|
1.0
|
|
OE2
|
C:GLU122
|
4.1
|
14.7
|
1.0
|
|
CB
|
C:GLU122
|
4.3
|
13.3
|
1.0
|
|
NE
|
C:P3S505
|
4.3
|
12.7
|
1.0
|
|
O
|
C:HOH640
|
4.4
|
17.4
|
1.0
|
|
O1A
|
C:ADP504
|
4.4
|
16.5
|
1.0
|
|
CG
|
C:ASN188
|
4.4
|
20.5
|
1.0
|
|
CG
|
C:GLU186
|
4.4
|
15.2
|
1.0
|
|
O5'
|
C:ADP504
|
4.5
|
20.4
|
1.0
|
|
O1B
|
C:ADP504
|
4.5
|
16.3
|
1.0
|
|
OE2
|
C:GLU179
|
4.8
|
19.8
|
1.0
|
|
NE2
|
C:GLN175
|
5.0
|
20.2
|
1.0
|
|
Magnesium binding site 8 out
of 9 in 7cqu
Go back to
Magnesium Binding Sites List in 7cqu
Magnesium binding site 8 out
of 9 in the Gmas/Adp/Metsox-P Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Gmas/Adp/Metsox-P Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg502
b:17.8
occ:1.00
|
OE2
|
C:GLU325
|
2.1
|
17.4
|
1.0
|
|
O2A
|
C:P3S505
|
2.1
|
16.1
|
1.0
|
|
O3B
|
C:ADP504
|
2.1
|
17.4
|
1.0
|
|
OE2
|
C:GLU122
|
2.3
|
14.7
|
1.0
|
|
OE1
|
C:GLU122
|
2.3
|
16.8
|
1.0
|
|
ND1
|
C:HIS235
|
2.5
|
14.0
|
1.0
|
|
CD
|
C:GLU122
|
2.6
|
16.5
|
1.0
|
|
CD
|
C:GLU325
|
3.3
|
16.9
|
1.0
|
|
PB
|
C:ADP504
|
3.3
|
21.2
|
1.0
|
|
PA
|
C:P3S505
|
3.3
|
17.4
|
1.0
|
|
CE1
|
C:HIS235
|
3.4
|
17.2
|
1.0
|
|
CG
|
C:HIS235
|
3.4
|
16.9
|
1.0
|
|
O2B
|
C:ADP504
|
3.6
|
17.2
|
1.0
|
|
CB
|
C:HIS235
|
3.6
|
15.1
|
1.0
|
|
O3A
|
C:P3S505
|
3.6
|
11.9
|
1.0
|
|
NH1
|
C:ARG327
|
3.8
|
13.3
|
1.0
|
|
O
|
C:HOH811
|
3.8
|
13.4
|
1.0
|
|
MG
|
C:MG501
|
3.8
|
16.6
|
1.0
|
|
NE2
|
C:HIS237
|
3.8
|
16.7
|
1.0
|
|
NH1
|
C:ARG317
|
4.0
|
16.4
|
1.0
|
|
OE1
|
C:GLU325
|
4.0
|
19.7
|
1.0
|
|
CG
|
C:GLU122
|
4.0
|
14.4
|
1.0
|
|
O3A
|
C:ADP504
|
4.1
|
19.5
|
1.0
|
|
CG
|
C:GLU325
|
4.3
|
17.5
|
1.0
|
|
NE
|
C:P3S505
|
4.4
|
12.7
|
1.0
|
|
O1A
|
C:P3S505
|
4.4
|
17.2
|
1.0
|
|
O1B
|
C:ADP504
|
4.5
|
16.3
|
1.0
|
|
NE2
|
C:HIS235
|
4.5
|
15.2
|
1.0
|
|
CD2
|
C:HIS235
|
4.5
|
13.3
|
1.0
|
|
CD2
|
C:HIS237
|
4.6
|
16.2
|
1.0
|
|
CB
|
C:GLU122
|
4.6
|
13.3
|
1.0
|
|
O2A
|
C:ADP504
|
4.8
|
17.3
|
1.0
|
|
CE1
|
C:HIS237
|
4.8
|
20.1
|
1.0
|
|
CZ
|
C:ARG327
|
4.8
|
16.3
|
1.0
|
|
PA
|
C:ADP504
|
5.0
|
17.7
|
1.0
|
|
MG
|
C:MG503
|
5.0
|
18.0
|
1.0
|
|
Magnesium binding site 9 out
of 9 in 7cqu
Go back to
Magnesium Binding Sites List in 7cqu
Magnesium binding site 9 out
of 9 in the Gmas/Adp/Metsox-P Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Gmas/Adp/Metsox-P Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg503
b:18.0
occ:1.00
|
OE1
|
C:GLU186
|
2.0
|
15.6
|
1.0
|
|
OE2
|
C:GLU124
|
2.2
|
16.4
|
1.0
|
|
O
|
C:HOH811
|
2.2
|
13.4
|
1.0
|
|
OE2
|
C:GLU179
|
2.2
|
19.8
|
1.0
|
|
O3A
|
C:P3S505
|
2.3
|
11.9
|
1.0
|
|
NE
|
C:P3S505
|
2.3
|
12.7
|
1.0
|
|
PA
|
C:P3S505
|
3.0
|
17.4
|
1.0
|
|
CD
|
C:GLU186
|
3.0
|
17.5
|
1.0
|
|
CD
|
C:GLU179
|
3.0
|
17.2
|
1.0
|
|
CD
|
C:GLU124
|
3.1
|
16.6
|
1.0
|
|
OE2
|
C:GLU186
|
3.4
|
16.0
|
1.0
|
|
MG
|
C:MG501
|
3.5
|
16.6
|
1.0
|
|
CG
|
C:GLU124
|
3.6
|
14.7
|
1.0
|
|
SD
|
C:P3S505
|
3.6
|
16.0
|
1.0
|
|
CG
|
C:GLU179
|
3.7
|
14.9
|
1.0
|
|
O
|
C:HOH613
|
3.8
|
17.1
|
1.0
|
|
OE1
|
C:GLU179
|
3.9
|
16.8
|
1.0
|
|
O2A
|
C:P3S505
|
3.9
|
16.1
|
1.0
|
|
OE1
|
C:GLU122
|
4.0
|
16.8
|
1.0
|
|
CG
|
C:P3S505
|
4.0
|
13.1
|
1.0
|
|
O1A
|
C:P3S505
|
4.1
|
17.2
|
1.0
|
|
OE1
|
C:GLU124
|
4.1
|
15.1
|
1.0
|
|
CE
|
C:P3S505
|
4.3
|
15.8
|
1.0
|
|
CG
|
C:GLU186
|
4.3
|
15.2
|
1.0
|
|
CB
|
C:P3S505
|
4.5
|
13.5
|
1.0
|
|
O
|
C:HOH810
|
4.5
|
19.9
|
1.0
|
|
CB
|
C:GLU186
|
4.5
|
14.8
|
1.0
|
|
CE1
|
C:HIS235
|
4.5
|
17.2
|
1.0
|
|
ND1
|
C:HIS235
|
4.8
|
14.0
|
1.0
|
|
O
|
C:HOH640
|
4.8
|
17.4
|
1.0
|
|
OE
|
C:P3S505
|
4.8
|
15.6
|
1.0
|
|
MG
|
C:MG502
|
5.0
|
17.8
|
1.0
|
|
Reference:
N.Wang,
X.L.Chen,
C.Gao,
M.Peng,
P.Wang,
N.Zhang,
F.Li,
G.P.Yang,
Q.T.Shen,
S.Li,
Y.Chen,
Y.Z.Zhang,
C.Y.Li.
Crystal Structures of Gamma-Glutamylmethylamide Synthetase Provide Insight Into Bacterial Metabolism of Oceanic Monomethylamine. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 33199371
DOI: 10.1074/JBC.RA120.015952
Page generated: Wed Oct 2 14:19:53 2024
|
