Magnesium in PDB 7ctx: Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium:
2.7.10.1; 2.7.11.1;

The structure of Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium, PDB code: 7ctx was solved by X.Wei, Y.L.Wang, T.Y.Gu, F.J.Xin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.63 / 2.91
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	72.389, 50.732, 93.066, 90, 106.65, 90
R / Rfree (%)	22.5 / 24.4

The binding sites of Magnesium atom in the Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium (pdb code 7ctx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium, PDB code: 7ctx:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:65.2 occ:1.00 O2A A:ANP701 2.1 61.5 0.0 OD2 A:ASP507 2.3 63.5 1.0 OD1 A:ASN494 2.3 50.1 1.0 O1B A:ANP701 2.7 55.3 0.0 O3G A:ANP701 3.2 57.5 0.0 PA A:ANP701 3.3 57.4 0.0 CG A:ASP507 3.4 64.0 1.0 O A:ALA493 3.5 49.6 1.0 CG A:ASN494 3.5 48.9 1.0 O5' A:ANP701 3.6 55.5 0.0 C5' A:ANP701 3.8 53.8 0.0 PB A:ANP701 3.9 55.9 0.0 O3A A:ANP701 4.0 56.6 0.0 C A:ALA493 4.1 48.9 1.0 CA A:ASN494 4.1 45.7 1.0 OD1 A:ASP507 4.2 64.8 1.0 CB A:ASP507 4.3 63.8 1.0 N A:ASN494 4.4 47.0 1.0 CB A:ASN494 4.4 46.8 1.0 C8 A:ANP701 4.5 50.0 0.0 O1A A:ANP701 4.5 57.9 0.0 ND2 A:ASN494 4.5 49.7 1.0 NZ A:LYS377 4.5 48.1 1.0 PG A:ANP701 4.5 57.4 0.0 N3B A:ANP701 4.8 56.5 0.0 CB A:ALA493 4.9 50.9 1.0 N7 A:ANP701 4.9 50.0 0.0 O2B A:ANP701 5.0 55.3 0.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:63.2 occ:1.00 O1B B:ANP701 2.1 63.0 0.0 O2A B:ANP701 2.2 63.6 0.0 OD2 B:ASP507 2.4 56.1 1.0 OD1 B:ASN494 2.5 42.9 1.0 PA B:ANP701 3.4 64.0 0.0 PB B:ANP701 3.4 63.1 0.0 O B:ALA493 3.4 43.7 1.0 CG B:ASP507 3.5 55.8 1.0 CG B:ASN494 3.7 42.5 1.0 O3A B:ANP701 3.8 62.9 0.0 O2G B:ANP701 3.9 55.6 0.0 C B:ALA493 4.0 42.5 1.0 C8 B:ANP701 4.2 47.3 0.0 O5' B:ANP701 4.2 60.6 0.0 O2B B:ANP701 4.2 63.5 0.0 CA B:ASN494 4.3 42.2 1.0 OD1 B:ASP507 4.3 57.0 1.0 CB B:ASP507 4.4 54.0 1.0 N B:ASN494 4.4 42.3 1.0 C3' B:ANP701 4.5 50.3 0.0 O1A B:ANP701 4.6 64.8 0.0 CB B:ASN494 4.6 41.9 1.0 C5' B:ANP701 4.6 57.2 0.0 ND2 B:ASN494 4.6 42.8 1.0 CB B:ALA493 4.6 41.1 1.0 N3B B:ANP701 4.7 59.0 0.0 O4' B:ANP701 4.7 51.0 0.0 PG B:ANP701 4.8 56.9 0.0 NZ B:LYS377 4.9 55.5 1.0 C4' B:ANP701 4.9 52.8 0.0 C2' B:ANP701 4.9 49.0 0.0 OG B:SER506 5.0 50.0 1.0 N7 B:ANP701 5.0 47.3 0.0 CA B:ALA493 5.0 41.4 1.0

X.Wei, Y.L.Wang, T.Y.Gu, F.J.Xin. Crystal Structure of Arabidopsis Thaliana SOBIR1 Kinase Domain(Residues 388-401 Deleted) in Complex with Amp-Pnp and Magnesium To Be Published.