Magnesium in PDB 7cvk: Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (100 Ms)

All present enzymatic activity of Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (100 Ms):
5.3.1.5;

The structure of Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (100 Ms), PDB code: 7cvk was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	72.01 / 1.70
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	94.440, 100.240, 103.520, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 19.9

The binding sites of Magnesium atom in the Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (100 Ms) (pdb code 7cvk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (100 Ms), PDB code: 7cvk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (100 Ms)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (100 Ms) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:11.3 occ:1.00 O A:HOH702 2.1 22.0 1.0 OE1 A:GLU217 2.1 19.7 1.0 OD2 A:ASP255 2.1 22.8 1.0 OD1 A:ASP257 2.4 18.2 1.0 OD1 A:ASP255 2.5 24.0 1.0 NE2 A:HIS220 2.5 16.3 1.0 CG A:ASP255 2.6 23.0 1.0 CD2 A:HIS220 3.1 10.5 1.0 CD A:GLU217 3.2 13.4 1.0 CG A:ASP257 3.3 17.7 1.0 OD2 A:ASP257 3.5 23.8 1.0 O A:HOH778 3.7 21.5 1.0 CE1 A:HIS220 3.7 11.0 1.0 OE2 A:GLU217 3.8 18.4 1.0 ND2 A:ASN247 4.0 13.0 1.0 CB A:ASP255 4.1 13.3 1.0 O A:HOH552 4.2 15.5 1.0 CG A:HIS220 4.3 10.1 1.0 CG A:GLU217 4.5 10.6 1.0 O A:HOH529 4.5 47.4 1.0 O A:HOH627 4.6 34.4 1.0 ND1 A:HIS220 4.6 12.3 1.0 OD2 A:ASP287 4.7 23.6 1.0 CE A:LYS183 4.7 13.2 1.0 CB A:ASP257 4.7 9.7 1.0 NZ A:LYS183 4.8 17.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (100 Ms)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (100 Ms) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:20.1 occ:1.00 OE2 A:GLU217 2.0 18.4 1.0 OD2 A:ASP287 2.1 23.6 1.0 OE1 A:GLU181 2.4 32.5 1.0 OD2 A:ASP245 2.4 18.1 1.0 CD A:GLU181 3.0 27.1 1.0 O A:HOH529 3.0 47.4 1.0 OE2 A:GLU181 3.2 24.7 1.0 CG A:ASP287 3.2 19.5 1.0 CD A:GLU217 3.2 13.4 1.0 O A:HOH596 3.5 27.4 1.0 CG A:ASP245 3.5 19.9 1.0 CB A:ASP287 3.7 13.0 1.0 CB A:ASP245 4.0 10.0 1.0 OE1 A:GLU217 4.0 19.7 1.0 O A:HOH674 4.0 34.4 1.0 O A:HOH702 4.1 22.0 1.0 CE1 A:HIS220 4.2 11.0 1.0 CG A:GLU217 4.2 10.6 1.0 CB A:GLU217 4.2 10.0 1.0 CG A:GLU181 4.3 11.2 1.0 OD1 A:ASP287 4.3 13.6 1.0 OD1 A:ASP245 4.5 14.3 1.0 NE2 A:HIS220 4.6 16.3 1.0 ND1 A:HIS220 4.9 12.3 1.0 ND2 A:ASN215 5.0 15.9 1.0

K.H.Nam, K.H.Nam. N/A N/A.