Magnesium in PDB 7cvm: Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (500 Ms)

All present enzymatic activity of Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (500 Ms):
5.3.1.5;

The structure of Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (500 Ms), PDB code: 7cvm was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	72.05 / 2.00
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	94.550, 100.260, 103.610, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 24.8

The binding sites of Magnesium atom in the Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (500 Ms) (pdb code 7cvm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (500 Ms), PDB code: 7cvm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (500 Ms)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (500 Ms) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:9.3 occ:1.00 O A:HOH659 2.0 17.0 1.0 OE1 A:GLU217 2.1 16.6 1.0 OD2 A:ASP255 2.1 22.8 1.0 OD1 A:ASP257 2.4 16.4 1.0 OD1 A:ASP255 2.6 18.8 1.0 NE2 A:HIS220 2.7 13.1 1.0 CG A:ASP255 2.7 16.8 1.0 CD A:GLU217 3.1 12.6 1.0 CD2 A:HIS220 3.2 11.4 1.0 CG A:ASP257 3.3 14.0 1.0 OD2 A:ASP257 3.4 25.0 1.0 OE2 A:GLU217 3.6 15.6 1.0 O A:HOH747 3.7 19.7 1.0 CE1 A:HIS220 3.8 13.0 1.0 ND2 A:ASN247 4.0 16.8 1.0 CB A:ASP255 4.2 15.6 1.0 O A:HOH566 4.2 18.0 1.0 CG A:HIS220 4.4 11.4 1.0 CG A:GLU217 4.4 10.8 1.0 ND1 A:HIS220 4.7 9.9 1.0 CB A:ASP257 4.7 15.0 1.0 NZ A:LYS183 4.7 20.2 1.0 OD2 A:ASP287 4.7 17.8 1.0 CE A:LYS183 4.8 14.1 1.0 O A:HOH554 4.8 32.8 1.0 MG A:MG402 4.9 16.5 1.0 O A:HOH508 5.0 31.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (500 Ms)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glucose Isomerase By Fixed-Target Serial Synchrotron Crystallography (500 Ms) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:16.5 occ:1.00 OE2 A:GLU217 1.9 15.6 1.0 OD2 A:ASP287 2.2 17.8 1.0 OD2 A:ASP245 2.5 18.4 1.0 OE1 A:GLU181 2.6 28.6 1.0 O A:HOH508 2.8 31.6 1.0 CD A:GLU217 3.1 12.6 1.0 CD A:GLU181 3.2 22.5 1.0 CG A:ASP287 3.3 18.3 1.0 O A:HOH589 3.5 31.6 1.0 OE2 A:GLU181 3.5 21.5 1.0 CG A:ASP245 3.5 19.1 1.0 CB A:ASP287 3.7 13.3 1.0 O A:HOH545 3.8 30.7 1.0 CB A:ASP245 3.9 12.6 1.0 CG A:GLU217 4.0 10.8 1.0 OE1 A:GLU217 4.0 16.6 1.0 CB A:GLU217 4.1 12.3 1.0 O A:HOH659 4.1 17.0 1.0 CE1 A:HIS220 4.2 13.0 1.0 CG A:GLU181 4.4 16.3 1.0 OD1 A:ASP287 4.4 17.5 1.0 NE2 A:HIS220 4.6 13.1 1.0 OD1 A:ASP245 4.6 21.6 1.0 MG A:MG401 4.9 9.3 1.0 ND1 A:HIS220 4.9 9.9 1.0

K.H.Nam, K.H.Nam. N/A N/A.