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Magnesium in PDB 7cwe: Human Fructose-1,6-Bisphosphatase 1 in Apo R-State

Enzymatic activity of Human Fructose-1,6-Bisphosphatase 1 in Apo R-State

All present enzymatic activity of Human Fructose-1,6-Bisphosphatase 1 in Apo R-State:
3.1.3.11;

Protein crystallography data

The structure of Human Fructose-1,6-Bisphosphatase 1 in Apo R-State, PDB code: 7cwe was solved by Y.Chen, J.Zhang, C.Li, Y.Cao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.96 / 3.00
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 125.305, 125.305, 108.03, 90, 90, 90
R / Rfree (%) 25.8 / 29.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Fructose-1,6-Bisphosphatase 1 in Apo R-State (pdb code 7cwe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human Fructose-1,6-Bisphosphatase 1 in Apo R-State, PDB code: 7cwe:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7cwe

Go back to Magnesium Binding Sites List in 7cwe
Magnesium binding site 1 out of 2 in the Human Fructose-1,6-Bisphosphatase 1 in Apo R-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Fructose-1,6-Bisphosphatase 1 in Apo R-State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:33.1
occ:1.00
OD2 A:ASP122 2.0 75.8 1.0
OE2 A:GLU281 2.0 60.6 1.0
OD2 A:ASP119 2.1 56.7 1.0
CG A:ASP119 3.2 55.9 1.0
CG A:ASP122 3.2 83.8 1.0
CD A:GLU281 3.3 67.4 1.0
OE1 A:GLU98 3.3 52.7 1.0
OD1 A:ASP119 3.6 52.7 1.0
CG A:GLU98 3.6 39.1 1.0
CD A:GLU98 3.7 55.1 1.0
CB A:ASP122 3.9 60.4 1.0
OE1 A:GLU281 4.1 44.6 1.0
CG A:GLU281 4.2 50.4 1.0
OD1 A:ASP122 4.2 74.8 1.0
CA A:ASP122 4.2 66.8 1.0
CB A:GLU98 4.4 44.0 1.0
O A:LEU121 4.4 54.0 1.0
CB A:ASP119 4.5 32.8 1.0
OE2 A:GLU98 4.6 60.2 1.0

Magnesium binding site 2 out of 2 in 7cwe

Go back to Magnesium Binding Sites List in 7cwe
Magnesium binding site 2 out of 2 in the Human Fructose-1,6-Bisphosphatase 1 in Apo R-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Fructose-1,6-Bisphosphatase 1 in Apo R-State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:25.7
occ:1.00
OD1 B:ASP122 1.9 41.8 1.0
OD2 B:ASP119 1.9 47.4 1.0
OE2 B:GLU281 1.9 42.1 1.0
OE2 B:GLU98 2.0 53.1 1.0
CG B:ASP122 2.7 58.1 1.0
CD B:GLU98 2.7 51.8 1.0
CG B:ASP119 3.1 48.1 1.0
CD B:GLU281 3.1 60.6 1.0
OD2 B:ASP122 3.3 58.4 1.0
CG B:GLU98 3.4 34.1 1.0
OE1 B:GLU98 3.6 56.7 1.0
OD1 B:ASP119 3.6 40.7 1.0
CB B:ASP122 3.7 49.2 1.0
OE1 B:GLU281 3.9 45.5 1.0
CG B:GLU281 4.0 50.0 1.0
CB B:ASP119 4.2 40.5 1.0
CB B:GLU98 4.2 42.1 1.0
CA B:ASP122 4.4 45.2 1.0
O B:LEU121 4.6 46.7 1.0

Reference:

J.Zhang, Y.Chen, C.Li, Y.Cao. Human Fructose-1,6-Bisphosphatase 1 in Apo R-State To Be Published.
Page generated: Wed Oct 2 14:39:57 2024

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