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Magnesium in PDB 7cyq: Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis

Enzymatic activity of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis

All present enzymatic activity of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis:
3.4.19.12; 3.6.4.13;

Other elements in 7cyq:

The structure of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis (pdb code 7cyq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis, PDB code: 7cyq:

Magnesium binding site 1 out of 1 in 7cyq

Go back to Magnesium Binding Sites List in 7cyq
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1004

b:30.0
occ:1.00
O1B A:GDP1003 1.8 84.9 1.0
O1A A:GDP1003 2.0 84.9 1.0
OD1 A:ASN209 2.1 55.7 1.0
OD2 A:ASP218 2.3 65.4 1.0
PB A:GDP1003 3.1 84.9 1.0
CG A:ASN209 3.1 55.7 1.0
PA A:GDP1003 3.2 84.9 1.0
CG A:ASP218 3.3 65.4 1.0
ND2 G:ASN1 3.5 78.0 1.0
O3A A:GDP1003 3.5 84.9 1.0
ND2 A:ASN209 3.6 55.7 1.0
OD2 A:ASP208 3.7 55.6 1.0
CB A:ASP218 3.7 65.4 1.0
O A:ASP208 3.9 55.6 1.0
O2B A:GDP1003 3.9 84.9 1.0
O5' A:GDP1003 4.1 84.9 1.0
O3B A:GDP1003 4.1 84.9 1.0
CG G:ASN1 4.3 78.0 1.0
CB A:ASN209 4.4 55.7 1.0
O2A A:GDP1003 4.4 84.9 1.0
OD1 A:ASP218 4.4 65.4 1.0
CA A:ASN209 4.6 55.7 1.0
C A:ASP208 4.7 55.6 1.0
OD1 G:ASN1 4.7 78.0 1.0
CG A:ASP208 4.7 55.6 1.0
CE1 A:TYR217 4.8 58.2 1.0
N A:ASN209 5.0 55.7 1.0

Reference:

L.Yan, J.Ge, L.Zheng, Y.Zhang, Y.Gao, T.Wang, Y.Huang, Y.Yang, S.Gao, M.Li, Z.Liu, H.Wang, Y.Li, Y.Chen, L.W.Guddat, Q.Wang, Z.Rao, Z.Lou. Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis. Cell 2020.
ISSN: ISSN 1097-4172
PubMed: 33232691
DOI: 10.1016/J.CELL.2020.11.016
Page generated: Wed Oct 2 14:39:59 2024

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