Magnesium in PDB 7d0j: Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii

All present enzymatic activity of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii:
1.97.1.12;

The structure of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220; Page 23, Binding sites: 221 - 230; Page 24, Binding sites: 231 - 240; Page 25, Binding sites: 241 - 250; Page 26, Binding sites: 251 - 260; Page 27, Binding sites: 261 - 270; Page 28, Binding sites: 271 - 280; Page 29, Binding sites: 281 - 290; Page 30, Binding sites: 291 - 300; Page 31, Binding sites: 301 - 310; Page 32, Binding sites: 311 - 320; Page 33, Binding sites: 321 - 330; Page 34, Binding sites: 331 - 332;

Binding sites:

The binding sites of Magnesium atom in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii (pdb code 7d0j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 332 binding sites of Magnesium where determined in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii, PDB code: 7d0j:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:69.1 occ:1.00 MG A:CLA801 0.0 69.1 1.0 NB A:CLA801 2.0 69.1 1.0 ND A:CLA801 2.0 69.1 1.0 NA A:CLA801 2.1 69.1 1.0 NC A:CLA801 2.1 69.1 1.0 C4D A:CLA801 2.9 69.1 1.0 C1B A:CLA801 3.0 69.1 1.0 C4B A:CLA801 3.0 69.1 1.0 C4A A:CLA801 3.0 69.1 1.0 C1C A:CLA801 3.1 69.1 1.0 C1D A:CLA801 3.1 69.1 1.0 C1A A:CLA801 3.1 69.1 1.0 C4C A:CLA801 3.1 69.1 1.0 CE1 A:HIS676 3.1 45.1 1.0 CHB A:CLA801 3.4 69.1 1.0 CHA A:CLA801 3.4 69.1 1.0 CHC A:CLA801 3.4 69.1 1.0 CHD A:CLA801 3.5 69.1 1.0 CAB B:CLA801 3.8 69.1 1.0 ND1 A:HIS676 3.8 45.1 1.0 C3B B:CLA801 4.1 69.1 1.0 NE2 A:HIS676 4.1 45.1 1.0 C3D A:CLA801 4.2 69.1 1.0 C2B A:CLA801 4.2 69.1 1.0 C3B A:CLA801 4.3 69.1 1.0 C2D A:CLA801 4.3 69.1 1.0 C2C A:CLA801 4.3 69.1 1.0 C3C A:CLA801 4.3 69.1 1.0 C3A A:CLA801 4.4 69.1 1.0 C2A A:CLA801 4.4 69.1 1.0 C4B B:CLA801 4.5 69.1 1.0 CHC B:CLA801 4.6 69.1 1.0 CBD A:CLA801 4.8 69.1 1.0 C2B B:CLA801 4.9 69.1 1.0 CBB B:CLA801 4.9 69.1 1.0 CMA A:CLA801 5.0 69.1 1.0

Magnesium binding site 2 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:54.5 occ:1.00 MG A:CLA802 0.0 54.5 1.0 NB A:CLA802 2.0 54.5 1.0 ND A:CLA802 2.0 54.5 1.0 NA A:CLA802 2.1 54.5 1.0 NC A:CLA802 2.1 54.5 1.0 CE A:MET684 2.6 41.0 1.0 C4D A:CLA802 2.9 54.5 1.0 C1B A:CLA802 3.0 54.5 1.0 CZ2 B:TRP583 3.0 40.3 1.0 C4A A:CLA802 3.0 54.5 1.0 C4B A:CLA802 3.0 54.5 1.0 C1C A:CLA802 3.1 54.5 1.0 C1A A:CLA802 3.1 54.5 1.0 C1D A:CLA802 3.1 54.5 1.0 C4C A:CLA802 3.1 54.5 1.0 CHB A:CLA802 3.4 54.5 1.0 CHC A:CLA802 3.4 54.5 1.0 CHA A:CLA802 3.4 54.5 1.0 CHD A:CLA802 3.5 54.5 1.0 CH2 B:TRP583 3.7 40.3 1.0 CE2 B:TRP583 4.0 40.3 1.0 SD A:MET684 4.1 41.0 1.0 C3D A:CLA802 4.2 54.5 1.0 C2B A:CLA802 4.3 54.5 1.0 C3B A:CLA802 4.3 54.5 1.0 NE1 B:TRP583 4.3 40.3 1.0 C2D A:CLA802 4.3 54.5 1.0 C2C A:CLA802 4.3 54.5 1.0 C3C A:CLA802 4.4 54.5 1.0 C3A A:CLA802 4.4 54.5 1.0 C2A A:CLA802 4.4 54.5 1.0 CG A:MET684 4.7 41.0 1.0 CB A:MET684 4.8 41.0 1.0 CBD A:CLA802 4.9 54.5 1.0 CMC A:CLA851 5.0 49.9 1.0

Magnesium binding site 3 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:69.1 occ:1.00 MG A:CLA803 0.0 69.1 1.0 NB A:CLA803 2.0 69.1 1.0 ND A:CLA803 2.0 69.1 1.0 NC A:CLA803 2.1 69.1 1.0 NA A:CLA803 2.1 69.1 1.0 C4D A:CLA803 2.9 69.1 1.0 C1B A:CLA803 3.0 69.1 1.0 C4B A:CLA803 3.0 69.1 1.0 C4A A:CLA803 3.0 69.1 1.0 C1C A:CLA803 3.0 69.1 1.0 C1A A:CLA803 3.1 69.1 1.0 C1D A:CLA803 3.1 69.1 1.0 C4C A:CLA803 3.1 69.1 1.0 CHC A:CLA803 3.4 69.1 1.0 CHB A:CLA803 3.4 69.1 1.0 CHA A:CLA803 3.4 69.1 1.0 CHD A:CLA803 3.5 69.1 1.0 CBB B:CLA802 3.6 69.1 1.0 C2B A:CLA803 4.2 69.1 1.0 C3B A:CLA803 4.2 69.1 1.0 C3D A:CLA803 4.2 69.1 1.0 C2C A:CLA803 4.3 69.1 1.0 C2D A:CLA803 4.3 69.1 1.0 C3C A:CLA803 4.4 69.1 1.0 CB B:ALA659 4.4 46.3 1.0 C3A A:CLA803 4.4 69.1 1.0 CAB B:CLA802 4.4 69.1 1.0 C2A A:CLA803 4.4 69.1 1.0 CBD A:CLA803 4.9 69.1 1.0 C3 A:CLA801 5.0 69.1 1.0

Magnesium binding site 4 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:66.7 occ:1.00 MG A:CLA804 0.0 66.7 1.0 NB A:CLA804 2.0 66.7 1.0 ND A:CLA804 2.0 66.7 1.0 NC A:CLA804 2.1 66.7 1.0 NA A:CLA804 2.1 66.7 1.0 C4D A:CLA804 2.9 66.7 1.0 NE2 A:HIS53 2.9 69.1 1.0 C1B A:CLA804 3.0 66.7 1.0 C4A A:CLA804 3.0 66.7 1.0 C4B A:CLA804 3.0 66.7 1.0 C1C A:CLA804 3.0 66.7 1.0 C4C A:CLA804 3.1 66.7 1.0 C1A A:CLA804 3.1 66.7 1.0 C1D A:CLA804 3.1 66.7 1.0 CHB A:CLA804 3.4 66.7 1.0 CHC A:CLA804 3.4 66.7 1.0 CHA A:CLA804 3.4 66.7 1.0 CHD A:CLA804 3.5 66.7 1.0 CG J:PRO12 3.7 51.2 1.0 CE1 A:HIS53 3.8 69.1 1.0 CD2 A:HIS53 3.9 69.1 1.0 CB J:PRO12 4.0 51.2 1.0 C3D A:CLA804 4.2 66.7 1.0 C2B A:CLA804 4.3 66.7 1.0 C3B A:CLA804 4.3 66.7 1.0 C2C A:CLA804 4.3 66.7 1.0 C2D A:CLA804 4.3 66.7 1.0 C3C A:CLA804 4.3 66.7 1.0 C3A A:CLA804 4.4 66.7 1.0 C2A A:CLA804 4.4 66.7 1.0 CD J:PRO12 4.7 51.2 1.0 C29 J:BCR101 4.8 51.6 1.0 CBD A:CLA804 4.9 66.7 1.0 ND1 A:HIS53 4.9 69.1 1.0

Magnesium binding site 5 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:69.1 occ:1.00 MG A:CLA805 0.0 69.1 1.0 NB A:CLA805 2.0 69.1 1.0 ND A:CLA805 2.0 69.1 1.0 NC A:CLA805 2.1 69.1 1.0 NA A:CLA805 2.1 69.1 1.0 C4D A:CLA805 2.9 69.1 1.0 NE2 A:HIS57 3.0 69.1 1.0 C1B A:CLA805 3.0 69.1 1.0 C4A A:CLA805 3.0 69.1 1.0 C4B A:CLA805 3.0 69.1 1.0 C1C A:CLA805 3.1 69.1 1.0 C4C A:CLA805 3.1 69.1 1.0 C1A A:CLA805 3.1 69.1 1.0 C1D A:CLA805 3.1 69.1 1.0 CHB A:CLA805 3.4 69.1 1.0 CHC A:CLA805 3.4 69.1 1.0 CHA A:CLA805 3.4 69.1 1.0 CHD A:CLA805 3.5 69.1 1.0 CD2 A:HIS57 3.9 69.1 1.0 CE1 A:HIS57 3.9 69.1 1.0 C7 A:CLA812 4.2 69.2 1.0 C3D A:CLA805 4.2 69.1 1.0 C2B A:CLA805 4.3 69.1 1.0 C3B A:CLA805 4.3 69.1 1.0 C2C A:CLA805 4.3 69.1 1.0 C2D A:CLA805 4.3 69.1 1.0 C3C A:CLA805 4.3 69.1 1.0 C3A A:CLA805 4.4 69.1 1.0 C2A A:CLA805 4.4 69.1 1.0 C5 A:CLA812 4.7 69.2 1.0 CBD A:CLA805 4.9 69.1 1.0 CBA A:CLA805 5.0 69.1 1.0

Magnesium binding site 6 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:69.1 occ:1.00 MG A:CLA806 0.0 69.1 1.0 NB A:CLA806 2.0 69.1 1.0 ND A:CLA806 2.0 69.1 1.0 NC A:CLA806 2.1 69.1 1.0 NA A:CLA806 2.1 69.1 1.0 C4D A:CLA806 2.9 69.1 1.0 C1B A:CLA806 3.0 69.1 1.0 NE2 A:HIS77 3.0 49.1 1.0 C4B A:CLA806 3.0 69.1 1.0 C4A A:CLA806 3.0 69.1 1.0 C1C A:CLA806 3.0 69.1 1.0 C1A A:CLA806 3.1 69.1 1.0 C4C A:CLA806 3.1 69.1 1.0 C1D A:CLA806 3.1 69.1 1.0 CMB A:CLA830 3.3 69.1 1.0 CHB A:CLA806 3.4 69.1 1.0 CHC A:CLA806 3.4 69.1 1.0 CHA A:CLA806 3.4 69.1 1.0 CD2 A:HIS77 3.5 49.1 1.0 CHD A:CLA806 3.5 69.1 1.0 CE1 A:HIS77 4.2 49.1 1.0 C3D A:CLA806 4.2 69.1 1.0 C2B A:CLA806 4.3 69.1 1.0 C3B A:CLA806 4.3 69.1 1.0 C2C A:CLA806 4.3 69.1 1.0 C2D A:CLA806 4.3 69.1 1.0 C3C A:CLA806 4.3 69.1 1.0 C3A A:CLA806 4.4 69.1 1.0 C2A A:CLA806 4.4 69.1 1.0 C2B A:CLA830 4.8 69.1 1.0 CG A:HIS77 4.8 49.1 1.0 CBD A:CLA806 4.9 69.1 1.0 CBB A:CLA830 5.0 69.1 1.0

Magnesium binding site 7 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:69.1 occ:1.00 MG A:CLA807 0.0 69.1 1.0 NB A:CLA807 2.0 69.1 1.0 ND A:CLA807 2.0 69.1 1.0 NC A:CLA807 2.1 69.1 1.0 NA A:CLA807 2.1 69.1 1.0 C4D A:CLA807 2.9 69.1 1.0 C1B A:CLA807 3.0 69.1 1.0 C4A A:CLA807 3.0 69.1 1.0 C4B A:CLA807 3.0 69.1 1.0 C1C A:CLA807 3.1 69.1 1.0 C4C A:CLA807 3.1 69.1 1.0 C1D A:CLA807 3.1 69.1 1.0 C1A A:CLA807 3.1 69.1 1.0 OE1 A:GLN80 3.3 48.1 1.0 CHB A:CLA807 3.4 69.1 1.0 CHC A:CLA807 3.4 69.1 1.0 CHA A:CLA807 3.4 69.1 1.0 CHD A:CLA807 3.5 69.1 1.0 NE2 A:GLN80 3.6 48.1 1.0 CD A:GLN80 3.7 48.1 1.0 C16 A:CLA807 4.0 69.1 1.0 C17 A:CLA807 4.1 69.1 1.0 C3D A:CLA807 4.2 69.1 1.0 C2B A:CLA807 4.2 69.1 1.0 C3B A:CLA807 4.3 69.1 1.0 C2C A:CLA807 4.3 69.1 1.0 C3C A:CLA807 4.3 69.1 1.0 C2D A:CLA807 4.3 69.1 1.0 C3A A:CLA807 4.4 69.1 1.0 C2A A:CLA807 4.4 69.1 1.0 CBD A:CLA807 4.9 69.1 1.0 CG A:GLN80 5.0 48.1 1.0

Magnesium binding site 8 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:58.9 occ:1.00 MG A:CLA808 0.0 58.9 1.0 NB A:CLA808 2.0 58.9 1.0 ND A:CLA808 2.0 58.9 1.0 NC A:CLA808 2.1 58.9 1.0 NA A:CLA808 2.1 58.9 1.0 C4D A:CLA808 2.9 58.9 1.0 NE2 A:HIS94 2.9 46.5 1.0 C1B A:CLA808 3.0 58.9 1.0 C4A A:CLA808 3.0 58.9 1.0 C4B A:CLA808 3.1 58.9 1.0 C1C A:CLA808 3.1 58.9 1.0 C4C A:CLA808 3.1 58.9 1.0 C1A A:CLA808 3.1 58.9 1.0 C1D A:CLA808 3.1 58.9 1.0 CHB A:CLA808 3.4 58.9 1.0 CHC A:CLA808 3.4 58.9 1.0 CHA A:CLA808 3.5 58.9 1.0 CE1 A:HIS94 3.5 46.5 1.0 CHD A:CLA808 3.5 58.9 1.0 CD2 A:HIS94 4.1 46.5 1.0 C3D A:CLA808 4.2 58.9 1.0 C2B A:CLA808 4.3 58.9 1.0 C3B A:CLA808 4.3 58.9 1.0 C2C A:CLA808 4.3 58.9 1.0 C2D A:CLA808 4.3 58.9 1.0 C3C A:CLA808 4.3 58.9 1.0 C3A A:CLA808 4.4 58.9 1.0 C2A A:CLA808 4.4 58.9 1.0 ND1 A:HIS94 4.7 46.5 1.0 CBD A:CLA808 4.9 58.9 1.0

Magnesium binding site 9 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:69.1 occ:1.00 MG A:CLA809 0.0 69.1 1.0 NB A:CLA809 2.0 69.1 1.0 ND A:CLA809 2.0 69.1 1.0 NA A:CLA809 2.1 69.1 1.0 NC A:CLA809 2.1 69.1 1.0 C4D A:CLA809 2.9 69.1 1.0 C1B A:CLA809 3.0 69.1 1.0 OE1 A:GLN116 3.0 50.7 1.0 C4A A:CLA809 3.0 69.1 1.0 C4B A:CLA809 3.0 69.1 1.0 C1C A:CLA809 3.1 69.1 1.0 C1D A:CLA809 3.1 69.1 1.0 C4C A:CLA809 3.1 69.1 1.0 C1A A:CLA809 3.1 69.1 1.0 CHB A:CLA809 3.4 69.1 1.0 CHC A:CLA809 3.4 69.1 1.0 CHA A:CLA809 3.5 69.1 1.0 CHD A:CLA809 3.5 69.1 1.0 NE2 A:GLN116 3.5 50.7 1.0 CD A:GLN116 3.6 50.7 1.0 C7 A:CLA828 4.1 61.3 1.0 C3D A:CLA809 4.2 69.1 1.0 C2B A:CLA809 4.3 69.1 1.0 C3B A:CLA809 4.3 69.1 1.0 C6 A:CLA828 4.3 61.3 1.0 C2D A:CLA809 4.3 69.1 1.0 C2C A:CLA809 4.3 69.1 1.0 C3C A:CLA809 4.3 69.1 1.0 C3A A:CLA809 4.4 69.1 1.0 C2A A:CLA809 4.4 69.1 1.0 C2 A:CLA828 4.5 61.3 1.0 O1A A:CLA809 4.9 69.1 1.0 C1 A:CLA828 4.9 61.3 1.0 CBD A:CLA809 4.9 69.1 1.0

Magnesium binding site 10 out of 332 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:59.5 occ:1.00 MG A:CLA810 0.0 59.5 1.0 NB A:CLA810 2.0 59.5 1.0 ND A:CLA810 2.0 59.5 1.0 NC A:CLA810 2.1 59.5 1.0 NA A:CLA810 2.1 59.5 1.0 OE1 A:GLN124 2.8 50.7 1.0 C4D A:CLA810 2.9 59.5 1.0 C1B A:CLA810 3.0 59.5 1.0 C4A A:CLA810 3.0 59.5 1.0 C4B A:CLA810 3.0 59.5 1.0 C1C A:CLA810 3.1 59.5 1.0 C4C A:CLA810 3.1 59.5 1.0 C1D A:CLA810 3.1 59.5 1.0 C1A A:CLA810 3.1 59.5 1.0 CHB A:CLA810 3.4 59.5 1.0 CHC A:CLA810 3.4 59.5 1.0 CHA A:CLA810 3.5 59.5 1.0 CHD A:CLA810 3.5 59.5 1.0 C20 A:CLA828 3.7 61.3 1.0 CD A:GLN124 4.0 50.7 1.0 C18 A:CLA828 4.0 61.3 1.0 C3D A:CLA810 4.2 59.5 1.0 C2B A:CLA810 4.2 59.5 1.0 C3B A:CLA810 4.3 59.5 1.0 C19 A:CLA828 4.3 61.3 1.0 C2C A:CLA810 4.3 59.5 1.0 C2D A:CLA810 4.3 59.5 1.0 C3C A:CLA810 4.3 59.5 1.0 C3A A:CLA810 4.4 59.5 1.0 C2A A:CLA810 4.4 59.5 1.0 NE2 A:GLN124 4.7 50.7 1.0 CBD A:CLA810 4.9 59.5 1.0 CB A:GLN124 5.0 50.7 1.0

Z.Huang, L.Shen, W.Wang, Z.Mao, X.Yi, T.Kuang, J.R.Shen, X.Zhang, G.Han. Structure of Photosystem I-Lhci-Lhcii From the Green Alga Chlamydomonas Reinhardtii in State 2. Nat Commun V. 12 1100 2021.
ISSN: ESSN 2041-1723
PubMed: 33597543
DOI: 10.1038/S41467-021-21362-6