Magnesium in PDB 7d1t: Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Enzymatic activity of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
All present enzymatic activity of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution:
1.10.3.9;
Other elements in 7d1t:
The structure of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 1 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:6.9
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
6.9
|
1.0
|
ND
|
A:CLA405
|
2.0
|
6.9
|
1.0
|
NB
|
A:CLA405
|
2.0
|
6.9
|
1.0
|
NA
|
A:CLA405
|
2.1
|
6.9
|
1.0
|
NC
|
A:CLA405
|
2.1
|
6.8
|
1.0
|
NE2
|
A:HIS198
|
2.3
|
6.7
|
1.0
|
C4D
|
A:CLA405
|
2.9
|
6.9
|
1.0
|
C4A
|
A:CLA405
|
3.0
|
7.0
|
1.0
|
C4B
|
A:CLA405
|
3.0
|
6.8
|
1.0
|
C1B
|
A:CLA405
|
3.0
|
6.9
|
1.0
|
C1C
|
A:CLA405
|
3.0
|
6.8
|
1.0
|
C1A
|
A:CLA405
|
3.0
|
7.0
|
1.0
|
C4C
|
A:CLA405
|
3.1
|
6.8
|
1.0
|
C1D
|
A:CLA405
|
3.2
|
6.9
|
1.0
|
CE1
|
A:HIS198
|
3.2
|
6.7
|
1.0
|
CD2
|
A:HIS198
|
3.3
|
6.7
|
1.0
|
CHB
|
A:CLA405
|
3.4
|
6.9
|
1.0
|
CHC
|
A:CLA405
|
3.4
|
6.8
|
1.0
|
CHA
|
A:CLA405
|
3.4
|
6.9
|
1.0
|
CHD
|
A:CLA405
|
3.6
|
6.8
|
1.0
|
CE
|
A:MET183
|
4.0
|
6.4
|
1.0
|
C3D
|
A:CLA405
|
4.2
|
6.9
|
1.0
|
CAB
|
D:CLA404
|
4.3
|
6.6
|
1.0
|
C3B
|
A:CLA405
|
4.3
|
6.8
|
1.0
|
C2B
|
A:CLA405
|
4.3
|
6.9
|
1.0
|
C3A
|
A:CLA405
|
4.4
|
7.0
|
1.0
|
C2A
|
A:CLA405
|
4.4
|
7.1
|
1.0
|
C2C
|
A:CLA405
|
4.4
|
6.8
|
1.0
|
ND1
|
A:HIS198
|
4.4
|
6.7
|
1.0
|
C2D
|
A:CLA405
|
4.4
|
6.9
|
1.0
|
C3C
|
A:CLA405
|
4.4
|
6.8
|
1.0
|
CG
|
A:HIS198
|
4.5
|
6.7
|
1.0
|
CBD
|
A:CLA405
|
4.8
|
6.9
|
1.0
|
|
Magnesium binding site 2 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 2 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:9.9
occ:1.00
|
MG
|
A:CLA406
|
0.0
|
9.9
|
1.0
|
ND
|
A:CLA406
|
2.0
|
9.9
|
1.0
|
NB
|
A:CLA406
|
2.0
|
9.9
|
1.0
|
NC
|
A:CLA406
|
2.1
|
9.8
|
1.0
|
NA
|
A:CLA406
|
2.1
|
10.0
|
1.0
|
O
|
A:HOH627
|
2.2
|
8.5
|
1.0
|
C4D
|
A:CLA406
|
2.9
|
9.9
|
1.0
|
C1B
|
A:CLA406
|
3.0
|
9.9
|
1.0
|
C4B
|
A:CLA406
|
3.0
|
9.9
|
1.0
|
C1C
|
A:CLA406
|
3.0
|
9.8
|
1.0
|
C4A
|
A:CLA406
|
3.0
|
10.1
|
1.0
|
C1A
|
A:CLA406
|
3.1
|
10.1
|
1.0
|
C4C
|
A:CLA406
|
3.2
|
9.8
|
1.0
|
C1D
|
A:CLA406
|
3.2
|
9.8
|
1.0
|
CHB
|
A:CLA406
|
3.4
|
10.0
|
1.0
|
CHC
|
A:CLA406
|
3.4
|
9.8
|
1.0
|
CHA
|
A:CLA406
|
3.4
|
10.0
|
1.0
|
CHD
|
A:CLA406
|
3.7
|
9.8
|
1.0
|
CBB
|
D:PHO402
|
4.0
|
9.9
|
1.0
|
C3D
|
A:CLA406
|
4.2
|
9.8
|
1.0
|
O
|
D:HOH614
|
4.2
|
7.8
|
1.0
|
C2B
|
A:CLA406
|
4.3
|
9.9
|
1.0
|
C3B
|
A:CLA406
|
4.3
|
9.9
|
1.0
|
C2C
|
A:CLA406
|
4.4
|
9.8
|
1.0
|
C2D
|
A:CLA406
|
4.4
|
9.8
|
1.0
|
C3A
|
A:CLA406
|
4.4
|
10.2
|
1.0
|
C2A
|
A:CLA406
|
4.4
|
10.4
|
1.0
|
C3C
|
A:CLA406
|
4.4
|
9.7
|
1.0
|
CG2
|
D:ILE178
|
4.6
|
7.1
|
1.0
|
CBD
|
A:CLA406
|
4.8
|
9.9
|
1.0
|
CBA
|
A:CLA406
|
4.8
|
11.5
|
1.0
|
CE2
|
A:PHE206
|
4.9
|
6.9
|
1.0
|
C20
|
D:PHO402
|
5.0
|
11.4
|
1.0
|
CG1
|
D:ILE178
|
5.0
|
7.1
|
1.0
|
|
Magnesium binding site 3 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 3 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg408
b:14.0
occ:1.00
|
MG
|
A:CLA408
|
0.0
|
14.0
|
1.0
|
ND
|
A:CLA408
|
2.0
|
13.9
|
1.0
|
NB
|
A:CLA408
|
2.0
|
14.0
|
1.0
|
NA
|
A:CLA408
|
2.1
|
14.2
|
1.0
|
NC
|
A:CLA408
|
2.1
|
13.9
|
1.0
|
NE2
|
A:HIS118
|
2.2
|
8.1
|
1.0
|
C4D
|
A:CLA408
|
3.0
|
13.9
|
1.0
|
C4A
|
A:CLA408
|
3.0
|
14.3
|
1.0
|
C1B
|
A:CLA408
|
3.0
|
14.0
|
1.0
|
C4B
|
A:CLA408
|
3.0
|
13.9
|
1.0
|
C1A
|
A:CLA408
|
3.0
|
14.3
|
1.0
|
C1C
|
A:CLA408
|
3.0
|
13.9
|
1.0
|
C4C
|
A:CLA408
|
3.1
|
13.9
|
1.0
|
CE1
|
A:HIS118
|
3.1
|
8.1
|
1.0
|
CD2
|
A:HIS118
|
3.2
|
8.1
|
1.0
|
C1D
|
A:CLA408
|
3.2
|
13.9
|
1.0
|
CHB
|
A:CLA408
|
3.4
|
14.1
|
1.0
|
CHC
|
A:CLA408
|
3.4
|
13.9
|
1.0
|
CHA
|
A:CLA408
|
3.5
|
14.0
|
1.0
|
CHD
|
A:CLA408
|
3.6
|
13.9
|
1.0
|
CG1
|
I:VAL8
|
4.2
|
18.8
|
1.0
|
CG2
|
I:VAL12
|
4.2
|
17.8
|
1.0
|
ND1
|
A:HIS118
|
4.2
|
8.1
|
1.0
|
C3D
|
A:CLA408
|
4.2
|
13.9
|
1.0
|
CG
|
A:HIS118
|
4.3
|
8.1
|
1.0
|
C3B
|
A:CLA408
|
4.3
|
13.9
|
1.0
|
C3A
|
A:CLA408
|
4.4
|
14.5
|
1.0
|
C2B
|
A:CLA408
|
4.4
|
14.0
|
1.0
|
C2A
|
A:CLA408
|
4.4
|
14.7
|
1.0
|
C2C
|
A:CLA408
|
4.4
|
13.9
|
1.0
|
C3C
|
A:CLA408
|
4.4
|
13.9
|
1.0
|
C2D
|
A:CLA408
|
4.5
|
13.9
|
1.0
|
CBD
|
A:CLA408
|
4.9
|
13.9
|
1.0
|
|
Magnesium binding site 4 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 4 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:25.9
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
25.9
|
1.0
|
ND
|
B:CLA601
|
2.0
|
26.0
|
1.0
|
NB
|
B:CLA601
|
2.0
|
25.8
|
1.0
|
NC
|
B:CLA601
|
2.1
|
25.7
|
1.0
|
NA
|
B:CLA601
|
2.1
|
26.2
|
1.0
|
O
|
B:HOH865
|
2.1
|
21.7
|
1.0
|
C4D
|
B:CLA601
|
3.0
|
26.1
|
1.0
|
C1C
|
B:CLA601
|
3.0
|
25.6
|
1.0
|
C4B
|
B:CLA601
|
3.0
|
25.6
|
1.0
|
C1B
|
B:CLA601
|
3.0
|
25.8
|
1.0
|
C4A
|
B:CLA601
|
3.0
|
26.3
|
1.0
|
C1A
|
B:CLA601
|
3.1
|
26.4
|
1.0
|
C4C
|
B:CLA601
|
3.1
|
25.7
|
1.0
|
C1D
|
B:CLA601
|
3.2
|
25.9
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
26.0
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
25.6
|
1.0
|
CHA
|
B:CLA601
|
3.5
|
26.3
|
1.0
|
C10
|
B:CLA601
|
3.6
|
34.9
|
1.0
|
CHD
|
B:CLA601
|
3.6
|
25.8
|
1.0
|
C11
|
B:CLA601
|
3.9
|
35.4
|
1.0
|
C12
|
B:CLA601
|
4.0
|
35.8
|
1.0
|
C3D
|
B:CLA601
|
4.2
|
26.1
|
1.0
|
C3B
|
B:CLA601
|
4.3
|
25.6
|
1.0
|
C2B
|
B:CLA601
|
4.3
|
25.7
|
1.0
|
C2C
|
B:CLA601
|
4.4
|
25.6
|
1.0
|
C3A
|
B:CLA601
|
4.4
|
26.6
|
1.0
|
O
|
B:TRP185
|
4.4
|
16.0
|
1.0
|
C3C
|
B:CLA601
|
4.4
|
25.6
|
1.0
|
C2A
|
B:CLA601
|
4.4
|
26.9
|
1.0
|
C2D
|
B:CLA601
|
4.4
|
26.0
|
1.0
|
CBB
|
B:CLA602
|
4.5
|
13.1
|
1.0
|
CE2
|
B:PHE190
|
4.6
|
14.1
|
1.0
|
C8
|
B:CLA601
|
4.6
|
34.6
|
1.0
|
C7
|
B:CLA601
|
4.7
|
34.2
|
1.0
|
CBD
|
B:CLA601
|
4.9
|
26.3
|
1.0
|
CZ
|
B:PHE190
|
5.0
|
14.1
|
1.0
|
|
Magnesium binding site 5 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 5 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:13.0
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
13.0
|
1.0
|
ND
|
B:CLA602
|
2.0
|
13.0
|
1.0
|
NB
|
B:CLA602
|
2.0
|
13.0
|
1.0
|
NC
|
B:CLA602
|
2.1
|
13.0
|
1.0
|
NA
|
B:CLA602
|
2.1
|
13.1
|
1.0
|
ND1
|
B:HIS201
|
2.2
|
10.8
|
1.0
|
CE1
|
B:HIS201
|
3.0
|
10.8
|
1.0
|
C4D
|
B:CLA602
|
3.0
|
13.0
|
1.0
|
C1B
|
B:CLA602
|
3.0
|
13.0
|
1.0
|
C1C
|
B:CLA602
|
3.0
|
13.0
|
1.0
|
C4A
|
B:CLA602
|
3.0
|
13.2
|
1.0
|
C4B
|
B:CLA602
|
3.0
|
13.0
|
1.0
|
C1A
|
B:CLA602
|
3.1
|
13.2
|
1.0
|
C4C
|
B:CLA602
|
3.1
|
12.9
|
1.0
|
C1D
|
B:CLA602
|
3.2
|
12.9
|
1.0
|
CHB
|
B:CLA602
|
3.3
|
13.1
|
1.0
|
CG
|
B:HIS201
|
3.4
|
10.8
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
13.0
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
13.1
|
1.0
|
CHD
|
B:CLA602
|
3.6
|
12.9
|
1.0
|
CZ
|
H:PHE41
|
3.7
|
14.6
|
1.0
|
CB
|
B:HIS201
|
3.8
|
10.8
|
1.0
|
NE2
|
B:HIS201
|
4.2
|
10.8
|
1.0
|
C3D
|
B:CLA602
|
4.2
|
13.0
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
13.0
|
1.0
|
C2B
|
B:CLA602
|
4.3
|
13.0
|
1.0
|
C2C
|
B:CLA602
|
4.3
|
13.0
|
1.0
|
CE2
|
H:PHE41
|
4.3
|
14.6
|
1.0
|
CD2
|
B:HIS201
|
4.4
|
10.8
|
1.0
|
C3C
|
B:CLA602
|
4.4
|
12.9
|
1.0
|
C3A
|
B:CLA602
|
4.4
|
13.3
|
1.0
|
CA
|
B:HIS201
|
4.4
|
10.9
|
1.0
|
C2A
|
B:CLA602
|
4.4
|
13.4
|
1.0
|
C2D
|
B:CLA602
|
4.5
|
12.9
|
1.0
|
CE1
|
H:PHE41
|
4.6
|
14.6
|
1.0
|
CE1
|
B:PHE190
|
4.8
|
14.1
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
13.0
|
1.0
|
|
Magnesium binding site 6 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 6 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:11.0
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
11.0
|
1.0
|
ND
|
B:CLA603
|
2.0
|
11.0
|
1.0
|
NB
|
B:CLA603
|
2.0
|
11.0
|
1.0
|
NC
|
B:CLA603
|
2.1
|
11.0
|
1.0
|
NA
|
B:CLA603
|
2.1
|
11.1
|
1.0
|
NE2
|
B:HIS202
|
2.2
|
10.9
|
1.0
|
C4D
|
B:CLA603
|
3.0
|
11.0
|
1.0
|
C4B
|
B:CLA603
|
3.0
|
11.0
|
1.0
|
C1C
|
B:CLA603
|
3.0
|
10.9
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
11.0
|
1.0
|
CE1
|
B:HIS202
|
3.0
|
10.9
|
1.0
|
C4A
|
B:CLA603
|
3.0
|
11.1
|
1.0
|
C1A
|
B:CLA603
|
3.1
|
11.1
|
1.0
|
C4C
|
B:CLA603
|
3.1
|
10.9
|
1.0
|
C1D
|
B:CLA603
|
3.2
|
11.0
|
1.0
|
CD2
|
B:HIS202
|
3.2
|
10.9
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
10.9
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
11.0
|
1.0
|
CHA
|
B:CLA603
|
3.4
|
11.1
|
1.0
|
CHD
|
B:CLA603
|
3.6
|
10.9
|
1.0
|
ND1
|
B:HIS202
|
4.2
|
10.9
|
1.0
|
C3D
|
B:CLA603
|
4.2
|
11.0
|
1.0
|
CG
|
B:HIS202
|
4.3
|
10.9
|
1.0
|
C3B
|
B:CLA603
|
4.3
|
11.0
|
1.0
|
C2B
|
B:CLA603
|
4.3
|
11.0
|
1.0
|
C2C
|
B:CLA603
|
4.4
|
10.9
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
11.2
|
1.0
|
C2A
|
B:CLA603
|
4.4
|
11.2
|
1.0
|
C2D
|
B:CLA603
|
4.4
|
11.0
|
1.0
|
C3C
|
B:CLA603
|
4.4
|
10.9
|
1.0
|
C7
|
B:CLA605
|
4.7
|
13.2
|
1.0
|
C4
|
B:CLA605
|
4.7
|
12.4
|
1.0
|
C6
|
B:CLA605
|
4.8
|
13.0
|
1.0
|
C5
|
B:CLA605
|
4.9
|
12.7
|
1.0
|
CBD
|
B:CLA603
|
4.9
|
11.0
|
1.0
|
C9
|
B:CLA605
|
4.9
|
13.5
|
1.0
|
NE2
|
B:HIS201
|
5.0
|
10.8
|
1.0
|
CD2
|
B:HIS201
|
5.0
|
10.8
|
1.0
|
|
Magnesium binding site 7 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 7 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:9.8
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
9.8
|
1.0
|
ND
|
B:CLA604
|
2.0
|
9.8
|
1.0
|
NB
|
B:CLA604
|
2.0
|
9.8
|
1.0
|
NC
|
B:CLA604
|
2.1
|
9.7
|
1.0
|
NA
|
B:CLA604
|
2.1
|
9.9
|
1.0
|
NE2
|
B:HIS455
|
2.3
|
6.8
|
1.0
|
C4D
|
B:CLA604
|
3.0
|
9.8
|
1.0
|
C1B
|
B:CLA604
|
3.0
|
9.8
|
1.0
|
C4B
|
B:CLA604
|
3.0
|
9.7
|
1.0
|
C4A
|
B:CLA604
|
3.0
|
10.0
|
1.0
|
C1C
|
B:CLA604
|
3.1
|
9.7
|
1.0
|
C1A
|
B:CLA604
|
3.1
|
10.1
|
1.0
|
C4C
|
B:CLA604
|
3.1
|
9.7
|
1.0
|
CD2
|
B:HIS455
|
3.2
|
6.8
|
1.0
|
C1D
|
B:CLA604
|
3.2
|
9.7
|
1.0
|
CE1
|
B:HIS455
|
3.3
|
6.8
|
1.0
|
CHB
|
B:CLA604
|
3.3
|
9.9
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
9.7
|
1.0
|
CHA
|
B:CLA604
|
3.5
|
9.9
|
1.0
|
CHD
|
B:CLA604
|
3.7
|
9.7
|
1.0
|
C14
|
B:CLA612
|
3.9
|
10.9
|
1.0
|
C3D
|
B:CLA604
|
4.2
|
9.8
|
1.0
|
C2B
|
B:CLA604
|
4.3
|
9.8
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
9.7
|
1.0
|
CG
|
B:HIS455
|
4.3
|
6.8
|
1.0
|
ND1
|
B:HIS455
|
4.3
|
6.8
|
1.0
|
C2D
|
B:CLA604
|
4.4
|
9.8
|
1.0
|
C2C
|
B:CLA604
|
4.4
|
9.6
|
1.0
|
C3A
|
B:CLA604
|
4.4
|
10.1
|
1.0
|
C3C
|
B:CLA604
|
4.4
|
9.6
|
1.0
|
C2A
|
B:CLA604
|
4.5
|
10.3
|
1.0
|
C15
|
B:CLA612
|
4.6
|
11.0
|
1.0
|
C13
|
B:CLA612
|
4.7
|
10.9
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
9.9
|
1.0
|
|
Magnesium binding site 8 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 8 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:10.1
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
10.1
|
1.0
|
NB
|
B:CLA605
|
2.0
|
10.1
|
1.0
|
ND
|
B:CLA605
|
2.0
|
10.1
|
1.0
|
NC
|
B:CLA605
|
2.1
|
10.1
|
1.0
|
NA
|
B:CLA605
|
2.1
|
10.2
|
1.0
|
NE2
|
B:HIS100
|
2.2
|
9.9
|
1.0
|
C4D
|
B:CLA605
|
3.0
|
10.1
|
1.0
|
C1B
|
B:CLA605
|
3.0
|
10.2
|
1.0
|
C4A
|
B:CLA605
|
3.0
|
10.2
|
1.0
|
C4B
|
B:CLA605
|
3.0
|
10.1
|
1.0
|
C1C
|
B:CLA605
|
3.0
|
10.1
|
1.0
|
C1A
|
B:CLA605
|
3.1
|
10.2
|
1.0
|
CE1
|
B:HIS100
|
3.1
|
9.9
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
10.1
|
1.0
|
C1D
|
B:CLA605
|
3.2
|
10.1
|
1.0
|
CD2
|
B:HIS100
|
3.3
|
9.9
|
1.0
|
CHB
|
B:CLA605
|
3.3
|
10.2
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
10.1
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
10.2
|
1.0
|
CHD
|
B:CLA605
|
3.6
|
10.1
|
1.0
|
C1
|
B:CLA604
|
4.1
|
13.0
|
1.0
|
C4
|
B:CLA604
|
4.3
|
14.3
|
1.0
|
C3D
|
B:CLA605
|
4.3
|
10.1
|
1.0
|
ND1
|
B:HIS100
|
4.3
|
9.9
|
1.0
|
C3B
|
B:CLA605
|
4.3
|
10.2
|
1.0
|
C2B
|
B:CLA605
|
4.3
|
10.2
|
1.0
|
C2C
|
B:CLA605
|
4.4
|
10.1
|
1.0
|
C3A
|
B:CLA605
|
4.4
|
10.3
|
1.0
|
CG
|
B:HIS100
|
4.4
|
9.9
|
1.0
|
C3C
|
B:CLA605
|
4.4
|
10.1
|
1.0
|
C2A
|
B:CLA605
|
4.4
|
10.4
|
1.0
|
C2D
|
B:CLA605
|
4.5
|
10.1
|
1.0
|
C2
|
B:CLA604
|
4.8
|
13.7
|
1.0
|
C4
|
B:CLA606
|
4.9
|
16.7
|
1.0
|
C3
|
B:CLA604
|
4.9
|
14.3
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
10.1
|
1.0
|
O1A
|
B:CLA604
|
5.0
|
11.8
|
1.0
|
|
Magnesium binding site 9 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 9 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:13.8
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
13.8
|
1.0
|
ND
|
B:CLA606
|
2.0
|
13.8
|
1.0
|
NB
|
B:CLA606
|
2.0
|
13.8
|
1.0
|
NC
|
B:CLA606
|
2.1
|
13.7
|
1.0
|
NA
|
B:CLA606
|
2.1
|
13.8
|
1.0
|
ND1
|
B:HIS157
|
2.2
|
12.9
|
1.0
|
CE1
|
B:HIS157
|
3.0
|
12.9
|
1.0
|
C4D
|
B:CLA606
|
3.0
|
13.8
|
1.0
|
C1B
|
B:CLA606
|
3.0
|
13.7
|
1.0
|
C4B
|
B:CLA606
|
3.0
|
13.7
|
1.0
|
C4A
|
B:CLA606
|
3.0
|
13.9
|
1.0
|
C1C
|
B:CLA606
|
3.0
|
13.7
|
1.0
|
C1A
|
B:CLA606
|
3.1
|
13.9
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
13.8
|
1.0
|
C1D
|
B:CLA606
|
3.2
|
13.8
|
1.0
|
CHB
|
B:CLA606
|
3.3
|
13.8
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
13.7
|
1.0
|
CG
|
B:HIS157
|
3.4
|
12.9
|
1.0
|
CHA
|
B:CLA606
|
3.5
|
13.9
|
1.0
|
CHD
|
B:CLA606
|
3.6
|
13.8
|
1.0
|
CB
|
B:HIS157
|
3.9
|
13.0
|
1.0
|
C13
|
B:UNL623
|
4.0
|
27.7
|
1.0
|
C15
|
B:UNL623
|
4.1
|
27.6
|
1.0
|
NE2
|
B:HIS157
|
4.2
|
12.9
|
1.0
|
C3D
|
B:CLA606
|
4.2
|
13.8
|
1.0
|
C14
|
B:UNL623
|
4.3
|
27.7
|
1.0
|
C2B
|
B:CLA606
|
4.3
|
13.7
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
13.7
|
1.0
|
C2C
|
B:CLA606
|
4.4
|
13.7
|
1.0
|
CD2
|
B:HIS157
|
4.4
|
12.9
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
13.9
|
1.0
|
C2A
|
B:CLA606
|
4.4
|
14.0
|
1.0
|
C3C
|
B:CLA606
|
4.4
|
13.8
|
1.0
|
C2D
|
B:CLA606
|
4.5
|
13.8
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
13.9
|
1.0
|
C12
|
B:UNL623
|
4.9
|
27.8
|
1.0
|
CD
|
B:PRO164
|
5.0
|
14.6
|
1.0
|
|
Magnesium binding site 10 out
of 72 in 7d1t
Go back to
Magnesium Binding Sites List in 7d1t
Magnesium binding site 10 out
of 72 in the Cryo-Em Structure of Psii at 1.95 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Psii at 1.95 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg607
b:11.3
occ:1.00
|
MG
|
B:CLA607
|
0.0
|
11.3
|
1.0
|
ND
|
B:CLA607
|
2.0
|
11.3
|
1.0
|
NB
|
B:CLA607
|
2.0
|
11.3
|
1.0
|
NC
|
B:CLA607
|
2.1
|
11.2
|
1.0
|
NA
|
B:CLA607
|
2.1
|
11.4
|
1.0
|
O
|
B:HOH927
|
2.1
|
9.6
|
1.0
|
C4D
|
B:CLA607
|
3.0
|
11.4
|
1.0
|
C4B
|
B:CLA607
|
3.0
|
11.2
|
1.0
|
C1B
|
B:CLA607
|
3.0
|
11.3
|
1.0
|
C4A
|
B:CLA607
|
3.0
|
11.5
|
1.0
|
C1C
|
B:CLA607
|
3.0
|
11.2
|
1.0
|
C1A
|
B:CLA607
|
3.1
|
11.6
|
1.0
|
C4C
|
B:CLA607
|
3.1
|
11.2
|
1.0
|
C1D
|
B:CLA607
|
3.2
|
11.3
|
1.0
|
CHB
|
B:CLA607
|
3.4
|
11.4
|
1.0
|
CHC
|
B:CLA607
|
3.4
|
11.2
|
1.0
|
C12
|
B:LMG621
|
3.4
|
29.4
|
1.0
|
CHA
|
B:CLA607
|
3.4
|
11.4
|
1.0
|
CHD
|
B:CLA607
|
3.6
|
11.2
|
1.0
|
C14
|
B:LMG621
|
4.1
|
29.9
|
1.0
|
C3D
|
B:CLA607
|
4.2
|
11.3
|
1.0
|
C3B
|
B:CLA607
|
4.3
|
11.2
|
1.0
|
C2B
|
B:CLA607
|
4.3
|
11.2
|
1.0
|
C11
|
B:LMG621
|
4.4
|
29.3
|
1.0
|
C13
|
B:LMG621
|
4.4
|
29.6
|
1.0
|
C2C
|
B:CLA607
|
4.4
|
11.2
|
1.0
|
C3A
|
B:CLA607
|
4.4
|
11.6
|
1.0
|
C2A
|
B:CLA607
|
4.4
|
11.8
|
1.0
|
O
|
B:HOH811
|
4.4
|
10.1
|
1.0
|
C3C
|
B:CLA607
|
4.4
|
11.2
|
1.0
|
C2D
|
B:CLA607
|
4.5
|
11.3
|
1.0
|
SD
|
B:MET37
|
4.5
|
8.7
|
1.0
|
CE
|
B:MET37
|
4.6
|
8.7
|
1.0
|
CD2
|
B:PHE61
|
4.7
|
11.1
|
1.0
|
CB
|
B:PHE61
|
4.9
|
11.1
|
1.0
|
CBD
|
B:CLA607
|
4.9
|
11.4
|
1.0
|
|
Reference:
K.Kato,
N.Miyazaki,
T.Hamaguchi,
Y.Nakajima,
F.Akita,
K.Yonekura,
J.R.Shen.
High-Resolution Cryo-Em Structure of Photosystem II Reveals Damage From High-Dose Electron Beams Commun Biol 2021.
ISSN: ESSN 2399-3642
DOI: 10.1038/S42003-021-01919-3
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