Magnesium in PDB 7d1u: Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Enzymatic activity of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
All present enzymatic activity of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution:
1.10.3.9;
Other elements in 7d1u:
The structure of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 1 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:8.5
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
8.5
|
1.0
|
ND
|
A:CLA405
|
2.0
|
8.5
|
1.0
|
NB
|
A:CLA405
|
2.0
|
8.5
|
1.0
|
NC
|
A:CLA405
|
2.1
|
8.5
|
1.0
|
NA
|
A:CLA405
|
2.1
|
8.6
|
1.0
|
NE2
|
A:HIS198
|
2.3
|
8.4
|
1.0
|
C4D
|
A:CLA405
|
2.9
|
8.5
|
1.0
|
C1C
|
A:CLA405
|
3.0
|
8.5
|
1.0
|
C1B
|
A:CLA405
|
3.0
|
8.5
|
1.0
|
C4B
|
A:CLA405
|
3.0
|
8.5
|
1.0
|
C4A
|
A:CLA405
|
3.0
|
8.6
|
1.0
|
C1A
|
A:CLA405
|
3.1
|
8.6
|
1.0
|
C4C
|
A:CLA405
|
3.2
|
8.5
|
1.0
|
CE1
|
A:HIS198
|
3.2
|
8.4
|
1.0
|
C1D
|
A:CLA405
|
3.2
|
8.5
|
1.0
|
CD2
|
A:HIS198
|
3.4
|
8.4
|
1.0
|
CHB
|
A:CLA405
|
3.4
|
8.5
|
1.0
|
CHC
|
A:CLA405
|
3.4
|
8.5
|
1.0
|
CHA
|
A:CLA405
|
3.4
|
8.6
|
1.0
|
CHD
|
A:CLA405
|
3.7
|
8.5
|
1.0
|
CE
|
A:MET183
|
3.9
|
7.9
|
1.0
|
C3D
|
A:CLA405
|
4.2
|
8.5
|
1.0
|
ND1
|
A:HIS198
|
4.3
|
8.4
|
1.0
|
C3B
|
A:CLA405
|
4.4
|
8.5
|
1.0
|
C2B
|
A:CLA405
|
4.4
|
8.5
|
1.0
|
CAB
|
D:CLA403
|
4.4
|
8.5
|
1.0
|
C2C
|
A:CLA405
|
4.4
|
8.4
|
1.0
|
C3A
|
A:CLA405
|
4.4
|
8.6
|
1.0
|
C2A
|
A:CLA405
|
4.4
|
8.7
|
1.0
|
C2D
|
A:CLA405
|
4.4
|
8.5
|
1.0
|
C3C
|
A:CLA405
|
4.4
|
8.4
|
1.0
|
CG
|
A:HIS198
|
4.5
|
8.4
|
1.0
|
CBD
|
A:CLA405
|
4.8
|
8.5
|
1.0
|
|
Magnesium binding site 2 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 2 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:11.3
occ:1.00
|
MG
|
A:CLA406
|
0.0
|
11.3
|
1.0
|
NB
|
A:CLA406
|
2.0
|
11.3
|
1.0
|
ND
|
A:CLA406
|
2.0
|
11.3
|
1.0
|
NC
|
A:CLA406
|
2.1
|
11.3
|
1.0
|
NA
|
A:CLA406
|
2.1
|
11.5
|
1.0
|
O
|
A:HOH607
|
2.2
|
9.5
|
1.0
|
C4D
|
A:CLA406
|
3.0
|
11.3
|
1.0
|
C1C
|
A:CLA406
|
3.0
|
11.2
|
1.0
|
C4B
|
A:CLA406
|
3.0
|
11.3
|
1.0
|
C1B
|
A:CLA406
|
3.0
|
11.4
|
1.0
|
C4A
|
A:CLA406
|
3.0
|
11.6
|
1.0
|
C1A
|
A:CLA406
|
3.1
|
11.6
|
1.0
|
C4C
|
A:CLA406
|
3.1
|
11.2
|
1.0
|
C1D
|
A:CLA406
|
3.3
|
11.3
|
1.0
|
CHC
|
A:CLA406
|
3.4
|
11.3
|
1.0
|
CHB
|
A:CLA406
|
3.4
|
11.5
|
1.0
|
CHA
|
A:CLA406
|
3.4
|
11.4
|
1.0
|
CHD
|
A:CLA406
|
3.7
|
11.2
|
1.0
|
CBB
|
D:PHO402
|
3.9
|
10.3
|
1.0
|
O
|
A:HOH600
|
4.1
|
8.7
|
1.0
|
C3D
|
A:CLA406
|
4.2
|
11.3
|
1.0
|
C3B
|
A:CLA406
|
4.3
|
11.3
|
1.0
|
C2B
|
A:CLA406
|
4.4
|
11.4
|
1.0
|
C2C
|
A:CLA406
|
4.4
|
11.2
|
1.0
|
C3A
|
A:CLA406
|
4.4
|
11.7
|
1.0
|
C2A
|
A:CLA406
|
4.4
|
11.8
|
1.0
|
C3C
|
A:CLA406
|
4.4
|
11.2
|
1.0
|
C2D
|
A:CLA406
|
4.5
|
11.3
|
1.0
|
CG2
|
D:ILE178
|
4.5
|
8.5
|
1.0
|
CE2
|
A:PHE206
|
4.8
|
8.2
|
1.0
|
C20
|
D:PHO402
|
4.8
|
11.2
|
1.0
|
CBA
|
A:CLA406
|
4.9
|
12.9
|
1.0
|
CBD
|
A:CLA406
|
4.9
|
11.3
|
1.0
|
CG1
|
D:ILE178
|
5.0
|
8.5
|
1.0
|
|
Magnesium binding site 3 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 3 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg408
b:15.3
occ:1.00
|
MG
|
A:CLA408
|
0.0
|
15.3
|
1.0
|
ND
|
A:CLA408
|
2.0
|
15.2
|
1.0
|
NB
|
A:CLA408
|
2.0
|
15.2
|
1.0
|
NC
|
A:CLA408
|
2.1
|
15.2
|
1.0
|
NA
|
A:CLA408
|
2.1
|
15.5
|
1.0
|
NE2
|
A:HIS118
|
2.3
|
9.5
|
1.0
|
C4D
|
A:CLA408
|
3.0
|
15.2
|
1.0
|
C1C
|
A:CLA408
|
3.0
|
15.2
|
1.0
|
C4A
|
A:CLA408
|
3.0
|
15.6
|
1.0
|
C4B
|
A:CLA408
|
3.0
|
15.2
|
1.0
|
C1B
|
A:CLA408
|
3.0
|
15.3
|
1.0
|
C1A
|
A:CLA408
|
3.1
|
15.6
|
1.0
|
C4C
|
A:CLA408
|
3.1
|
15.2
|
1.0
|
CE1
|
A:HIS118
|
3.1
|
9.5
|
1.0
|
C1D
|
A:CLA408
|
3.2
|
15.2
|
1.0
|
CD2
|
A:HIS118
|
3.3
|
9.4
|
1.0
|
CHB
|
A:CLA408
|
3.4
|
15.4
|
1.0
|
CHC
|
A:CLA408
|
3.4
|
15.2
|
1.0
|
CHA
|
A:CLA408
|
3.5
|
15.3
|
1.0
|
CHD
|
A:CLA408
|
3.7
|
15.2
|
1.0
|
CG1
|
I:VAL8
|
4.2
|
18.4
|
1.0
|
C3D
|
A:CLA408
|
4.2
|
15.2
|
1.0
|
CG2
|
I:VAL12
|
4.3
|
17.2
|
1.0
|
ND1
|
A:HIS118
|
4.3
|
9.4
|
1.0
|
C3B
|
A:CLA408
|
4.3
|
15.2
|
1.0
|
C2B
|
A:CLA408
|
4.3
|
15.2
|
1.0
|
C2C
|
A:CLA408
|
4.4
|
15.1
|
1.0
|
C3A
|
A:CLA408
|
4.4
|
15.8
|
1.0
|
CG
|
A:HIS118
|
4.4
|
9.4
|
1.0
|
C2A
|
A:CLA408
|
4.4
|
16.0
|
1.0
|
C3C
|
A:CLA408
|
4.4
|
15.1
|
1.0
|
C2D
|
A:CLA408
|
4.5
|
15.2
|
1.0
|
CBD
|
A:CLA408
|
4.9
|
15.2
|
1.0
|
|
Magnesium binding site 4 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 4 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:29.2
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
29.2
|
1.0
|
ND
|
B:CLA601
|
2.0
|
29.2
|
1.0
|
NB
|
B:CLA601
|
2.0
|
29.0
|
1.0
|
NC
|
B:CLA601
|
2.1
|
28.9
|
1.0
|
NA
|
B:CLA601
|
2.1
|
29.6
|
1.0
|
O
|
B:HOH807
|
2.3
|
21.9
|
1.0
|
C4D
|
B:CLA601
|
3.0
|
29.4
|
1.0
|
C1C
|
B:CLA601
|
3.0
|
28.8
|
1.0
|
C4A
|
B:CLA601
|
3.0
|
29.6
|
1.0
|
C4B
|
B:CLA601
|
3.0
|
28.9
|
1.0
|
C1B
|
B:CLA601
|
3.0
|
29.0
|
1.0
|
C1A
|
B:CLA601
|
3.1
|
29.9
|
1.0
|
C4C
|
B:CLA601
|
3.1
|
28.9
|
1.0
|
C1D
|
B:CLA601
|
3.2
|
29.2
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
29.4
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
28.9
|
1.0
|
CHA
|
B:CLA601
|
3.5
|
29.6
|
1.0
|
CHD
|
B:CLA601
|
3.7
|
29.0
|
1.0
|
C10
|
B:CLA601
|
3.8
|
40.9
|
1.0
|
C12
|
B:CLA601
|
4.0
|
41.9
|
1.0
|
C11
|
B:CLA601
|
4.1
|
41.4
|
1.0
|
C3D
|
B:CLA601
|
4.3
|
29.4
|
1.0
|
O
|
B:TRP185
|
4.3
|
15.8
|
1.0
|
C2C
|
B:CLA601
|
4.3
|
28.8
|
1.0
|
C3B
|
B:CLA601
|
4.3
|
28.9
|
1.0
|
C2B
|
B:CLA601
|
4.4
|
29.0
|
1.0
|
C3A
|
B:CLA601
|
4.4
|
30.0
|
1.0
|
C2A
|
B:CLA601
|
4.4
|
30.4
|
1.0
|
C3C
|
B:CLA601
|
4.4
|
28.8
|
1.0
|
CE2
|
B:PHE190
|
4.5
|
14.4
|
1.0
|
C2D
|
B:CLA601
|
4.5
|
29.3
|
1.0
|
CBB
|
B:CLA602
|
4.6
|
14.1
|
1.0
|
C7
|
B:CLA601
|
4.7
|
39.9
|
1.0
|
O
|
B:HOH711
|
4.8
|
17.1
|
1.0
|
CZ
|
B:PHE190
|
4.8
|
14.3
|
1.0
|
C8
|
B:CLA601
|
4.9
|
40.5
|
1.0
|
CBD
|
B:CLA601
|
4.9
|
29.6
|
1.0
|
|
Magnesium binding site 5 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 5 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:14.0
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
14.0
|
1.0
|
ND
|
B:CLA602
|
2.0
|
14.0
|
1.0
|
NB
|
B:CLA602
|
2.0
|
14.0
|
1.0
|
NC
|
B:CLA602
|
2.1
|
14.0
|
1.0
|
NA
|
B:CLA602
|
2.1
|
14.1
|
1.0
|
ND1
|
B:HIS201
|
2.2
|
12.0
|
1.0
|
CE1
|
B:HIS201
|
2.9
|
12.0
|
1.0
|
C4D
|
B:CLA602
|
3.0
|
14.0
|
1.0
|
C1C
|
B:CLA602
|
3.0
|
14.0
|
1.0
|
C4A
|
B:CLA602
|
3.0
|
14.1
|
1.0
|
C1B
|
B:CLA602
|
3.0
|
14.0
|
1.0
|
C4B
|
B:CLA602
|
3.0
|
14.0
|
1.0
|
C1A
|
B:CLA602
|
3.1
|
14.1
|
1.0
|
C4C
|
B:CLA602
|
3.1
|
13.9
|
1.0
|
C1D
|
B:CLA602
|
3.3
|
13.9
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
14.1
|
1.0
|
CG
|
B:HIS201
|
3.4
|
12.1
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
14.0
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
14.0
|
1.0
|
CZ
|
H:PHE41
|
3.7
|
14.5
|
1.0
|
CHD
|
B:CLA602
|
3.7
|
13.9
|
1.0
|
CB
|
B:HIS201
|
3.9
|
12.1
|
1.0
|
NE2
|
B:HIS201
|
4.1
|
12.0
|
1.0
|
C3D
|
B:CLA602
|
4.3
|
13.9
|
1.0
|
CE2
|
H:PHE41
|
4.3
|
14.5
|
1.0
|
C2C
|
B:CLA602
|
4.3
|
14.0
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
14.0
|
1.0
|
C2B
|
B:CLA602
|
4.4
|
14.0
|
1.0
|
CD2
|
B:HIS201
|
4.4
|
12.0
|
1.0
|
C3A
|
B:CLA602
|
4.4
|
14.2
|
1.0
|
C3C
|
B:CLA602
|
4.4
|
13.9
|
1.0
|
C2A
|
B:CLA602
|
4.4
|
14.3
|
1.0
|
CA
|
B:HIS201
|
4.5
|
12.1
|
1.0
|
C2D
|
B:CLA602
|
4.5
|
13.9
|
1.0
|
CE1
|
H:PHE41
|
4.6
|
14.5
|
1.0
|
CE1
|
B:PHE190
|
4.9
|
14.3
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
14.0
|
1.0
|
CMA
|
B:CLA602
|
5.0
|
14.2
|
1.0
|
|
Magnesium binding site 6 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 6 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:11.8
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
11.8
|
1.0
|
ND
|
B:CLA603
|
2.0
|
11.8
|
1.0
|
NB
|
B:CLA603
|
2.0
|
11.8
|
1.0
|
NC
|
B:CLA603
|
2.1
|
11.7
|
1.0
|
NA
|
B:CLA603
|
2.1
|
11.8
|
1.0
|
NE2
|
B:HIS202
|
2.2
|
12.1
|
1.0
|
C4D
|
B:CLA603
|
3.0
|
11.8
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
11.8
|
1.0
|
C4A
|
B:CLA603
|
3.0
|
11.8
|
1.0
|
C4B
|
B:CLA603
|
3.0
|
11.7
|
1.0
|
C1C
|
B:CLA603
|
3.0
|
11.7
|
1.0
|
C1A
|
B:CLA603
|
3.1
|
11.8
|
1.0
|
C4C
|
B:CLA603
|
3.1
|
11.7
|
1.0
|
CD2
|
B:HIS202
|
3.1
|
12.1
|
1.0
|
C1D
|
B:CLA603
|
3.2
|
11.7
|
1.0
|
CE1
|
B:HIS202
|
3.2
|
12.1
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
11.8
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
11.7
|
1.0
|
CHA
|
B:CLA603
|
3.5
|
11.8
|
1.0
|
CHD
|
B:CLA603
|
3.6
|
11.7
|
1.0
|
C3D
|
B:CLA603
|
4.3
|
11.7
|
1.0
|
CG
|
B:HIS202
|
4.3
|
12.1
|
1.0
|
C2B
|
B:CLA603
|
4.3
|
11.8
|
1.0
|
ND1
|
B:HIS202
|
4.3
|
12.1
|
1.0
|
C3B
|
B:CLA603
|
4.3
|
11.8
|
1.0
|
C2C
|
B:CLA603
|
4.4
|
11.7
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
11.8
|
1.0
|
C2A
|
B:CLA603
|
4.4
|
11.9
|
1.0
|
C3C
|
B:CLA603
|
4.4
|
11.7
|
1.0
|
C2D
|
B:CLA603
|
4.4
|
11.7
|
1.0
|
C6
|
B:CLA605
|
4.5
|
13.7
|
1.0
|
C7
|
B:CLA605
|
4.6
|
13.9
|
1.0
|
C5
|
B:CLA605
|
4.7
|
13.4
|
1.0
|
C9
|
B:CLA605
|
4.7
|
14.1
|
1.0
|
C4
|
B:CLA605
|
4.8
|
13.2
|
1.0
|
CD2
|
B:HIS201
|
4.8
|
12.0
|
1.0
|
NE2
|
B:HIS201
|
4.9
|
12.0
|
1.0
|
CBD
|
B:CLA603
|
5.0
|
11.8
|
1.0
|
|
Magnesium binding site 7 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 7 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:11.7
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
11.7
|
1.0
|
ND
|
B:CLA604
|
2.0
|
11.7
|
1.0
|
NB
|
B:CLA604
|
2.0
|
11.7
|
1.0
|
NC
|
B:CLA604
|
2.1
|
11.6
|
1.0
|
NA
|
B:CLA604
|
2.1
|
11.9
|
1.0
|
NE2
|
B:HIS455
|
2.2
|
8.1
|
1.0
|
C4D
|
B:CLA604
|
3.0
|
11.7
|
1.0
|
C4B
|
B:CLA604
|
3.0
|
11.6
|
1.0
|
C1B
|
B:CLA604
|
3.0
|
11.7
|
1.0
|
C1C
|
B:CLA604
|
3.0
|
11.6
|
1.0
|
C4A
|
B:CLA604
|
3.0
|
11.9
|
1.0
|
C1A
|
B:CLA604
|
3.1
|
12.0
|
1.0
|
C4C
|
B:CLA604
|
3.1
|
11.6
|
1.0
|
CE1
|
B:HIS455
|
3.1
|
8.0
|
1.0
|
CD2
|
B:HIS455
|
3.2
|
8.1
|
1.0
|
C1D
|
B:CLA604
|
3.2
|
11.6
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
11.8
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
11.6
|
1.0
|
CHA
|
B:CLA604
|
3.5
|
11.8
|
1.0
|
CHD
|
B:CLA604
|
3.7
|
11.6
|
1.0
|
C14
|
B:CLA612
|
3.9
|
12.4
|
1.0
|
C3D
|
B:CLA604
|
4.2
|
11.7
|
1.0
|
ND1
|
B:HIS455
|
4.2
|
8.0
|
1.0
|
CG
|
B:HIS455
|
4.3
|
8.0
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
11.6
|
1.0
|
C2B
|
B:CLA604
|
4.3
|
11.7
|
1.0
|
C2C
|
B:CLA604
|
4.4
|
11.6
|
1.0
|
C3A
|
B:CLA604
|
4.4
|
12.1
|
1.0
|
C3C
|
B:CLA604
|
4.4
|
11.6
|
1.0
|
C2A
|
B:CLA604
|
4.4
|
12.2
|
1.0
|
C2D
|
B:CLA604
|
4.4
|
11.7
|
1.0
|
C13
|
B:CLA612
|
4.6
|
12.4
|
1.0
|
C15
|
B:CLA612
|
4.7
|
12.5
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
11.8
|
1.0
|
CE1
|
B:PHE451
|
5.0
|
8.3
|
1.0
|
|
Magnesium binding site 8 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 8 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:11.4
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
11.4
|
1.0
|
ND
|
B:CLA605
|
2.0
|
11.4
|
1.0
|
NB
|
B:CLA605
|
2.0
|
11.4
|
1.0
|
NC
|
B:CLA605
|
2.1
|
11.4
|
1.0
|
NA
|
B:CLA605
|
2.1
|
11.5
|
1.0
|
NE2
|
B:HIS100
|
2.2
|
11.6
|
1.0
|
C4D
|
B:CLA605
|
3.0
|
11.4
|
1.0
|
C4A
|
B:CLA605
|
3.0
|
11.5
|
1.0
|
C1B
|
B:CLA605
|
3.0
|
11.4
|
1.0
|
C1C
|
B:CLA605
|
3.0
|
11.4
|
1.0
|
C4B
|
B:CLA605
|
3.1
|
11.4
|
1.0
|
C1A
|
B:CLA605
|
3.1
|
11.5
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
11.4
|
1.0
|
CD2
|
B:HIS100
|
3.2
|
11.6
|
1.0
|
CE1
|
B:HIS100
|
3.2
|
11.6
|
1.0
|
C1D
|
B:CLA605
|
3.2
|
11.4
|
1.0
|
CHB
|
B:CLA605
|
3.4
|
11.5
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
11.4
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
11.4
|
1.0
|
CHD
|
B:CLA605
|
3.7
|
11.4
|
1.0
|
C1
|
B:CLA604
|
4.0
|
15.2
|
1.0
|
C3D
|
B:CLA605
|
4.3
|
11.4
|
1.0
|
ND1
|
B:HIS100
|
4.3
|
11.6
|
1.0
|
C2B
|
B:CLA605
|
4.4
|
11.4
|
1.0
|
CG
|
B:HIS100
|
4.4
|
11.6
|
1.0
|
C3B
|
B:CLA605
|
4.4
|
11.4
|
1.0
|
C2C
|
B:CLA605
|
4.4
|
11.4
|
1.0
|
C3A
|
B:CLA605
|
4.4
|
11.6
|
1.0
|
C2A
|
B:CLA605
|
4.4
|
11.6
|
1.0
|
C3C
|
B:CLA605
|
4.4
|
11.3
|
1.0
|
C2D
|
B:CLA605
|
4.5
|
11.4
|
1.0
|
C4
|
B:CLA604
|
4.6
|
16.6
|
1.0
|
C2
|
B:CLA604
|
4.8
|
15.9
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
11.4
|
1.0
|
O1A
|
B:CLA604
|
4.9
|
13.8
|
1.0
|
|
Magnesium binding site 9 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 9 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:15.5
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
15.5
|
1.0
|
ND
|
B:CLA606
|
2.0
|
15.6
|
1.0
|
NB
|
B:CLA606
|
2.0
|
15.5
|
1.0
|
NC
|
B:CLA606
|
2.1
|
15.5
|
1.0
|
NA
|
B:CLA606
|
2.1
|
15.6
|
1.0
|
ND1
|
B:HIS157
|
2.2
|
13.8
|
1.0
|
CE1
|
B:HIS157
|
2.9
|
13.8
|
1.0
|
C4D
|
B:CLA606
|
3.0
|
15.6
|
1.0
|
C1B
|
B:CLA606
|
3.0
|
15.5
|
1.0
|
C4A
|
B:CLA606
|
3.0
|
15.6
|
1.0
|
C1C
|
B:CLA606
|
3.0
|
15.5
|
1.0
|
C4B
|
B:CLA606
|
3.0
|
15.5
|
1.0
|
C1A
|
B:CLA606
|
3.1
|
15.7
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
15.5
|
1.0
|
C1D
|
B:CLA606
|
3.2
|
15.5
|
1.0
|
CHB
|
B:CLA606
|
3.3
|
15.6
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
15.5
|
1.0
|
CG
|
B:HIS157
|
3.4
|
13.8
|
1.0
|
CHA
|
B:CLA606
|
3.5
|
15.6
|
1.0
|
CHD
|
B:CLA606
|
3.6
|
15.5
|
1.0
|
C15
|
B:UNL622
|
3.7
|
23.0
|
1.0
|
C13
|
B:UNL622
|
3.9
|
23.0
|
1.0
|
CB
|
B:HIS157
|
4.0
|
13.8
|
1.0
|
NE2
|
B:HIS157
|
4.1
|
13.8
|
1.0
|
C3D
|
B:CLA606
|
4.3
|
15.6
|
1.0
|
C2B
|
B:CLA606
|
4.3
|
15.5
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
15.5
|
1.0
|
C2C
|
B:CLA606
|
4.4
|
15.5
|
1.0
|
CD2
|
B:HIS157
|
4.4
|
13.8
|
1.0
|
C14
|
B:UNL622
|
4.4
|
23.1
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
15.7
|
1.0
|
C3C
|
B:CLA606
|
4.4
|
15.5
|
1.0
|
C2A
|
B:CLA606
|
4.4
|
15.8
|
1.0
|
C2D
|
B:CLA606
|
4.5
|
15.6
|
1.0
|
C16
|
B:UNL622
|
4.9
|
23.0
|
1.0
|
CD
|
B:PRO164
|
4.9
|
14.6
|
1.0
|
CBD
|
B:CLA606
|
5.0
|
15.6
|
1.0
|
|
Magnesium binding site 10 out
of 72 in 7d1u
Go back to
Magnesium Binding Sites List in 7d1u
Magnesium binding site 10 out
of 72 in the Cryo-Em Structure of Psii at 2.08 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Psii at 2.08 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg607
b:12.4
occ:1.00
|
MG
|
B:CLA607
|
0.0
|
12.4
|
1.0
|
NB
|
B:CLA607
|
2.0
|
12.3
|
1.0
|
ND
|
B:CLA607
|
2.0
|
12.4
|
1.0
|
NC
|
B:CLA607
|
2.1
|
12.3
|
1.0
|
NA
|
B:CLA607
|
2.1
|
12.5
|
1.0
|
O
|
B:HOH894
|
2.2
|
10.6
|
1.0
|
C4D
|
B:CLA607
|
3.0
|
12.4
|
1.0
|
C1B
|
B:CLA607
|
3.0
|
12.3
|
1.0
|
C4B
|
B:CLA607
|
3.0
|
12.3
|
1.0
|
C1C
|
B:CLA607
|
3.0
|
12.3
|
1.0
|
C4A
|
B:CLA607
|
3.0
|
12.5
|
1.0
|
C1A
|
B:CLA607
|
3.1
|
12.6
|
1.0
|
C4C
|
B:CLA607
|
3.1
|
12.3
|
1.0
|
C1D
|
B:CLA607
|
3.2
|
12.3
|
1.0
|
CHB
|
B:CLA607
|
3.4
|
12.4
|
1.0
|
CHC
|
B:CLA607
|
3.4
|
12.3
|
1.0
|
C12
|
B:LMG620
|
3.5
|
26.7
|
1.0
|
CHA
|
B:CLA607
|
3.5
|
12.4
|
1.0
|
CHD
|
B:CLA607
|
3.7
|
12.3
|
1.0
|
C14
|
B:LMG620
|
4.3
|
27.1
|
1.0
|
O
|
B:HOH748
|
4.3
|
11.0
|
1.0
|
C3D
|
B:CLA607
|
4.3
|
12.4
|
1.0
|
SD
|
B:MET37
|
4.3
|
10.0
|
1.0
|
C2B
|
B:CLA607
|
4.3
|
12.3
|
1.0
|
C3B
|
B:CLA607
|
4.3
|
12.3
|
1.0
|
C2C
|
B:CLA607
|
4.4
|
12.3
|
1.0
|
C3A
|
B:CLA607
|
4.4
|
12.6
|
1.0
|
C2A
|
B:CLA607
|
4.4
|
12.8
|
1.0
|
C3C
|
B:CLA607
|
4.4
|
12.3
|
1.0
|
C11
|
B:LMG620
|
4.4
|
26.5
|
1.0
|
C2D
|
B:CLA607
|
4.5
|
12.3
|
1.0
|
C13
|
B:LMG620
|
4.5
|
26.9
|
1.0
|
CD2
|
B:PHE61
|
4.6
|
11.2
|
1.0
|
CE
|
B:MET37
|
4.6
|
10.0
|
1.0
|
CB
|
B:PHE61
|
4.8
|
11.2
|
1.0
|
CG
|
B:PHE61
|
4.9
|
11.2
|
1.0
|
CBD
|
B:CLA607
|
4.9
|
12.4
|
1.0
|
|
Reference:
K.Kato,
N.Miyazaki,
T.Hamaguchi,
Y.Nakajima,
F.Akita,
K.Yonekura,
J.R.Shen.
High-Resolution Cryo-Em Structure of Photosystem II Reveals Damage From High-Dose Electron Beams Commun Biol 2021.
ISSN: ESSN 2399-3642
DOI: 10.1038/S42003-021-01919-3
Page generated: Wed Oct 2 14:40:01 2024
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