Magnesium in PDB 7dah: Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp

All present enzymatic activity of Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp:
2.4.2.17;

The structure of Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp, PDB code: 7dah was solved by R.K.Pal, S.Gourinath, B.K.Biswal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.32 / 2.92
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	136.603, 136.603, 121.931, 90, 90, 120
R / Rfree (%)	21.6 / 26.8

The binding sites of Magnesium atom in the Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp (pdb code 7dah). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp, PDB code: 7dah:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:71.1 occ:1.00 OD2 C:ASP61 2.7 76.3 1.0 OD1 C:ASP60 2.8 65.7 1.0 OD2 C:ASP60 2.8 70.0 1.0 O2B C:ATP402 2.9 124.2 1.0 OD1 C:ASP61 3.0 76.0 1.0 CG C:ASP60 3.2 64.8 1.0 CG C:ASP61 3.2 70.7 1.0 O1G C:ATP402 3.4 116.7 1.0 O3B C:ATP402 3.5 117.4 1.0 O3G C:ATP402 3.5 118.0 1.0 PB C:ATP402 3.7 120.5 1.0 PG C:ATP402 3.7 120.8 1.0 CG2 C:VAL81 4.0 59.5 1.0 O3A C:ATP402 4.0 118.7 0.7 CB C:ASP61 4.5 64.2 1.0 N C:ASP61 4.6 57.7 1.0 O3' C:ATP402 4.6 84.0 1.0 CB C:ASP60 4.7 59.0 1.0 OH C:TYR136 4.7 56.6 1.0 C5' C:ATP402 4.7 99.7 1.0 CA C:ASP61 4.9 59.7 1.0

Magnesium binding site 2 out of 2 in the Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg401 b:76.6 occ:1.00 O1B F:ATP404 2.1 103.5 0.8 OD1 F:ASP61 2.5 71.5 1.0 O2G F:ATP404 2.9 102.6 0.8 OD1 F:ASP60 2.9 63.3 1.0 CG F:ASP61 3.2 68.7 1.0 PB F:ATP404 3.3 97.8 0.8 OD2 F:ASP61 3.3 72.9 1.0 O1G F:ATP404 3.3 99.2 0.8 OD2 F:ASP60 3.4 66.4 1.0 O3B F:ATP404 3.4 95.2 0.8 PG F:ATP404 3.4 98.6 0.8 CG F:ASP60 3.5 63.2 1.0 O3A F:ATP404 3.9 100.4 0.8 CG2 F:VAL81 4.6 57.2 1.0 O2B F:ATP404 4.6 102.6 0.8 CB F:ASP61 4.7 64.2 1.0 N F:ASP61 4.9 57.3 1.0 OH F:TYR136 4.9 61.6 1.0 O3G F:ATP404 4.9 84.7 0.8 C5' F:ATP404 5.0 89.5 1.0 CB F:ASP60 5.0 59.4 1.0

R.K.Pal, S.Gourinath, B.K.Biswal. Adenosine Triphosphate Phosphoribosyltransferase From Vibrio Cholerae in Complex with Atp and Prpp To Be Published.