Magnesium in PDB 7ddq: Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
Other elements in 7ddq:
The structure of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 1 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
o:Mg100
b:12.0
occ:1.00
|
MG
|
o:BCL100
|
0.0
|
12.0
|
1.0
|
|
ND
|
o:BCL100
|
2.0
|
12.0
|
1.0
|
|
NB
|
o:BCL100
|
2.1
|
12.0
|
1.0
|
|
NC
|
o:BCL100
|
2.1
|
12.0
|
1.0
|
|
NA
|
o:BCL100
|
2.2
|
12.0
|
1.0
|
|
NE2
|
o:HIS32
|
2.9
|
8.5
|
1.0
|
|
C4D
|
o:BCL100
|
3.0
|
12.0
|
1.0
|
|
C1B
|
o:BCL100
|
3.1
|
12.0
|
1.0
|
|
C4B
|
o:BCL100
|
3.1
|
12.0
|
1.0
|
|
C1C
|
o:BCL100
|
3.1
|
12.0
|
1.0
|
|
C4A
|
o:BCL100
|
3.1
|
12.0
|
1.0
|
|
C1D
|
o:BCL100
|
3.1
|
12.0
|
1.0
|
|
C4C
|
o:BCL100
|
3.1
|
12.0
|
1.0
|
|
C1A
|
o:BCL100
|
3.2
|
12.0
|
1.0
|
|
CHC
|
o:BCL100
|
3.4
|
12.0
|
1.0
|
|
CHB
|
o:BCL100
|
3.4
|
12.0
|
1.0
|
|
CHA
|
o:BCL100
|
3.4
|
12.0
|
1.0
|
|
CHD
|
o:BCL100
|
3.5
|
12.0
|
1.0
|
|
CE1
|
o:HIS32
|
3.8
|
8.5
|
1.0
|
|
CBB
|
N:BCL202
|
3.8
|
11.9
|
1.0
|
|
CD2
|
o:HIS32
|
3.9
|
8.5
|
1.0
|
|
CMB
|
N:BCL202
|
4.1
|
11.9
|
1.0
|
|
C3D
|
o:BCL100
|
4.2
|
12.0
|
1.0
|
|
C2D
|
o:BCL100
|
4.3
|
12.0
|
1.0
|
|
C2B
|
o:BCL100
|
4.3
|
12.0
|
1.0
|
|
C3B
|
o:BCL100
|
4.3
|
12.0
|
1.0
|
|
C3A
|
o:BCL100
|
4.4
|
12.0
|
1.0
|
|
C2C
|
o:BCL100
|
4.4
|
12.0
|
1.0
|
|
C3C
|
o:BCL100
|
4.4
|
12.0
|
1.0
|
|
C2A
|
o:BCL100
|
4.5
|
12.0
|
1.0
|
|
C2B
|
N:BCL202
|
4.6
|
11.9
|
1.0
|
|
CAB
|
N:BCL202
|
4.7
|
11.9
|
1.0
|
|
C3B
|
N:BCL202
|
4.9
|
11.9
|
1.0
|
|
CBD
|
o:BCL100
|
4.9
|
12.0
|
1.0
|
|
CMD
|
O:BCL101
|
4.9
|
14.3
|
1.0
|
|
CMA
|
o:BCL100
|
4.9
|
12.0
|
1.0
|
|
ND1
|
o:HIS32
|
5.0
|
8.5
|
1.0
|
|
Magnesium binding site 2 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 2 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Mg202
b:11.9
occ:1.00
|
MG
|
N:BCL202
|
0.0
|
11.9
|
1.0
|
|
ND
|
N:BCL202
|
2.0
|
11.9
|
1.0
|
|
NB
|
N:BCL202
|
2.1
|
11.9
|
1.0
|
|
NC
|
N:BCL202
|
2.1
|
11.9
|
1.0
|
|
NA
|
N:BCL202
|
2.2
|
11.9
|
1.0
|
|
NE2
|
N:HIS38
|
2.7
|
9.6
|
1.0
|
|
C4D
|
N:BCL202
|
3.0
|
11.9
|
1.0
|
|
C4B
|
N:BCL202
|
3.1
|
11.9
|
1.0
|
|
C1B
|
N:BCL202
|
3.1
|
11.9
|
1.0
|
|
C1C
|
N:BCL202
|
3.1
|
11.9
|
1.0
|
|
C4A
|
N:BCL202
|
3.1
|
11.9
|
1.0
|
|
C1D
|
N:BCL202
|
3.1
|
11.9
|
1.0
|
|
C4C
|
N:BCL202
|
3.1
|
11.9
|
1.0
|
|
C1A
|
N:BCL202
|
3.2
|
11.9
|
1.0
|
|
CD2
|
N:HIS38
|
3.2
|
9.6
|
1.0
|
|
CHC
|
N:BCL202
|
3.4
|
11.9
|
1.0
|
|
CHB
|
N:BCL202
|
3.4
|
11.9
|
1.0
|
|
CHA
|
N:BCL202
|
3.4
|
11.9
|
1.0
|
|
CHD
|
N:BCL202
|
3.5
|
11.9
|
1.0
|
|
CBB
|
o:BCL100
|
3.8
|
12.0
|
1.0
|
|
CE1
|
N:HIS38
|
3.8
|
9.6
|
1.0
|
|
C3D
|
N:BCL202
|
4.2
|
11.9
|
1.0
|
|
C2B
|
N:BCL202
|
4.3
|
11.9
|
1.0
|
|
C2D
|
N:BCL202
|
4.3
|
11.9
|
1.0
|
|
C3B
|
N:BCL202
|
4.3
|
11.9
|
1.0
|
|
CMB
|
o:BCL100
|
4.4
|
12.0
|
1.0
|
|
C2C
|
N:BCL202
|
4.4
|
11.9
|
1.0
|
|
C3C
|
N:BCL202
|
4.4
|
11.9
|
1.0
|
|
C3A
|
N:BCL202
|
4.4
|
11.9
|
1.0
|
|
C2A
|
N:BCL202
|
4.5
|
11.9
|
1.0
|
|
CG
|
N:HIS38
|
4.5
|
9.6
|
1.0
|
|
CAB
|
o:BCL100
|
4.6
|
12.0
|
1.0
|
|
C10
|
N:BCL202
|
4.7
|
11.9
|
1.0
|
|
ND1
|
N:HIS38
|
4.8
|
9.6
|
1.0
|
|
C2B
|
o:BCL100
|
4.8
|
12.0
|
1.0
|
|
CMD
|
n:BCL100
|
4.8
|
11.2
|
1.0
|
|
C3B
|
o:BCL100
|
4.9
|
12.0
|
1.0
|
|
CBD
|
N:BCL202
|
4.9
|
11.9
|
1.0
|
|
Magnesium binding site 3 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 3 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
t:Mg101
b:31.2
occ:1.00
|
MG
|
t:BCL101
|
0.0
|
31.2
|
1.0
|
|
ND
|
t:BCL101
|
2.0
|
31.2
|
1.0
|
|
NB
|
t:BCL101
|
2.1
|
31.2
|
1.0
|
|
NC
|
t:BCL101
|
2.1
|
31.2
|
1.0
|
|
NA
|
t:BCL101
|
2.2
|
31.2
|
1.0
|
|
NE2
|
t:HIS32
|
2.8
|
30.6
|
1.0
|
|
C4D
|
t:BCL101
|
3.0
|
31.2
|
1.0
|
|
C4B
|
t:BCL101
|
3.1
|
31.2
|
1.0
|
|
C1B
|
t:BCL101
|
3.1
|
31.2
|
1.0
|
|
C1C
|
t:BCL101
|
3.1
|
31.2
|
1.0
|
|
C4A
|
t:BCL101
|
3.1
|
31.2
|
1.0
|
|
C1D
|
t:BCL101
|
3.1
|
31.2
|
1.0
|
|
C4C
|
t:BCL101
|
3.1
|
31.2
|
1.0
|
|
C1A
|
t:BCL101
|
3.2
|
31.2
|
1.0
|
|
CHC
|
t:BCL101
|
3.4
|
31.2
|
1.0
|
|
CD2
|
t:HIS32
|
3.4
|
30.6
|
1.0
|
|
CHB
|
t:BCL101
|
3.4
|
31.2
|
1.0
|
|
CHA
|
t:BCL101
|
3.4
|
31.2
|
1.0
|
|
CHD
|
t:BCL101
|
3.5
|
31.2
|
1.0
|
|
CE1
|
t:HIS32
|
3.9
|
30.6
|
1.0
|
|
C3D
|
t:BCL101
|
4.2
|
31.2
|
1.0
|
|
C2B
|
t:BCL101
|
4.2
|
31.2
|
1.0
|
|
C3B
|
t:BCL101
|
4.3
|
31.2
|
1.0
|
|
C2D
|
t:BCL101
|
4.3
|
31.2
|
1.0
|
|
C2C
|
t:BCL101
|
4.4
|
31.2
|
1.0
|
|
C3C
|
t:BCL101
|
4.4
|
31.2
|
1.0
|
|
C3A
|
t:BCL101
|
4.5
|
31.2
|
1.0
|
|
C2A
|
t:BCL101
|
4.5
|
31.2
|
1.0
|
|
CBB
|
S:BCL101
|
4.6
|
25.2
|
1.0
|
|
CMB
|
S:BCL101
|
4.6
|
25.2
|
1.0
|
|
CG
|
t:HIS32
|
4.6
|
30.6
|
1.0
|
|
CMD
|
t:BCL103
|
4.7
|
40.8
|
1.0
|
|
CBD
|
t:BCL101
|
4.9
|
31.2
|
1.0
|
|
ND1
|
t:HIS32
|
4.9
|
30.6
|
1.0
|
|
Magnesium binding site 4 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 4 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
t:Mg103
b:40.8
occ:1.00
|
MG
|
t:BCL103
|
0.0
|
40.8
|
1.0
|
|
ND
|
t:BCL103
|
2.0
|
40.8
|
1.0
|
|
NB
|
t:BCL103
|
2.1
|
40.8
|
1.0
|
|
NC
|
t:BCL103
|
2.1
|
40.8
|
1.0
|
|
NA
|
t:BCL103
|
2.2
|
40.8
|
1.0
|
|
NE2
|
T:HIS38
|
2.7
|
32.8
|
1.0
|
|
C4D
|
t:BCL103
|
3.0
|
40.8
|
1.0
|
|
C4B
|
t:BCL103
|
3.1
|
40.8
|
1.0
|
|
C1B
|
t:BCL103
|
3.1
|
40.8
|
1.0
|
|
C1C
|
t:BCL103
|
3.1
|
40.8
|
1.0
|
|
C4A
|
t:BCL103
|
3.1
|
40.8
|
1.0
|
|
C1D
|
t:BCL103
|
3.1
|
40.8
|
1.0
|
|
C4C
|
t:BCL103
|
3.2
|
40.8
|
1.0
|
|
C1A
|
t:BCL103
|
3.2
|
40.8
|
1.0
|
|
CD2
|
T:HIS38
|
3.3
|
32.8
|
1.0
|
|
CHC
|
t:BCL103
|
3.4
|
40.8
|
1.0
|
|
CHB
|
t:BCL103
|
3.4
|
40.8
|
1.0
|
|
CHA
|
t:BCL103
|
3.4
|
40.8
|
1.0
|
|
CHD
|
t:BCL103
|
3.5
|
40.8
|
1.0
|
|
CE1
|
T:HIS38
|
3.9
|
32.8
|
1.0
|
|
CMB
|
u:BCL101
|
4.2
|
42.4
|
1.0
|
|
C3D
|
t:BCL103
|
4.2
|
40.8
|
1.0
|
|
C2B
|
t:BCL103
|
4.3
|
40.8
|
1.0
|
|
C3B
|
t:BCL103
|
4.3
|
40.8
|
1.0
|
|
C2D
|
t:BCL103
|
4.3
|
40.8
|
1.0
|
|
C10
|
t:BCL103
|
4.4
|
40.8
|
1.0
|
|
C2C
|
t:BCL103
|
4.4
|
40.8
|
1.0
|
|
C2A
|
t:BCL103
|
4.4
|
40.8
|
1.0
|
|
C3A
|
t:BCL103
|
4.4
|
40.8
|
1.0
|
|
C3C
|
t:BCL103
|
4.5
|
40.8
|
1.0
|
|
CG
|
T:HIS38
|
4.5
|
32.8
|
1.0
|
|
CBB
|
u:BCL101
|
4.6
|
42.4
|
1.0
|
|
ND1
|
T:HIS38
|
4.8
|
32.8
|
1.0
|
|
CAB
|
u:BCL101
|
4.8
|
42.4
|
1.0
|
|
C2B
|
u:BCL101
|
4.8
|
42.4
|
1.0
|
|
CBD
|
t:BCL103
|
4.9
|
40.8
|
1.0
|
|
C8
|
t:BCL103
|
5.0
|
40.8
|
1.0
|
|
Magnesium binding site 5 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 5 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg101
b:25.2
occ:1.00
|
MG
|
S:BCL101
|
0.0
|
25.2
|
1.0
|
|
ND
|
S:BCL101
|
2.0
|
25.2
|
1.0
|
|
NB
|
S:BCL101
|
2.1
|
25.2
|
1.0
|
|
NC
|
S:BCL101
|
2.1
|
25.2
|
1.0
|
|
NA
|
S:BCL101
|
2.2
|
25.2
|
1.0
|
|
NE2
|
S:HIS38
|
2.7
|
22.5
|
1.0
|
|
C4D
|
S:BCL101
|
3.0
|
25.2
|
1.0
|
|
C4B
|
S:BCL101
|
3.1
|
25.2
|
1.0
|
|
C1B
|
S:BCL101
|
3.1
|
25.2
|
1.0
|
|
C1C
|
S:BCL101
|
3.1
|
25.2
|
1.0
|
|
C4A
|
S:BCL101
|
3.1
|
25.2
|
1.0
|
|
C1D
|
S:BCL101
|
3.1
|
25.2
|
1.0
|
|
C4C
|
S:BCL101
|
3.1
|
25.2
|
1.0
|
|
CD2
|
S:HIS38
|
3.2
|
22.5
|
1.0
|
|
C1A
|
S:BCL101
|
3.2
|
25.2
|
1.0
|
|
CHC
|
S:BCL101
|
3.4
|
25.2
|
1.0
|
|
CHB
|
S:BCL101
|
3.4
|
25.2
|
1.0
|
|
CHA
|
S:BCL101
|
3.4
|
25.2
|
1.0
|
|
CHD
|
S:BCL101
|
3.5
|
25.2
|
1.0
|
|
CBB
|
t:BCL101
|
3.9
|
31.2
|
1.0
|
|
CE1
|
S:HIS38
|
4.0
|
22.5
|
1.0
|
|
C3D
|
S:BCL101
|
4.2
|
25.2
|
1.0
|
|
C2B
|
S:BCL101
|
4.3
|
25.2
|
1.0
|
|
C3B
|
S:BCL101
|
4.3
|
25.2
|
1.0
|
|
C2D
|
S:BCL101
|
4.3
|
25.2
|
1.0
|
|
CMB
|
t:BCL101
|
4.3
|
31.2
|
1.0
|
|
C2C
|
S:BCL101
|
4.4
|
25.2
|
1.0
|
|
C2A
|
S:BCL101
|
4.4
|
25.2
|
1.0
|
|
C3A
|
S:BCL101
|
4.4
|
25.2
|
1.0
|
|
C3C
|
S:BCL101
|
4.4
|
25.2
|
1.0
|
|
CG
|
S:HIS38
|
4.5
|
22.5
|
1.0
|
|
C11
|
S:BCL101
|
4.7
|
25.2
|
1.0
|
|
CAB
|
t:BCL101
|
4.7
|
31.2
|
1.0
|
|
ND1
|
S:HIS38
|
4.8
|
22.5
|
1.0
|
|
C2B
|
t:BCL101
|
4.9
|
31.2
|
1.0
|
|
CBD
|
S:BCL101
|
4.9
|
25.2
|
1.0
|
|
C3B
|
t:BCL101
|
5.0
|
31.2
|
1.0
|
|
Magnesium binding site 6 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 6 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
r:Mg101
b:22.4
occ:1.00
|
MG
|
r:BCL101
|
0.0
|
22.4
|
1.0
|
|
ND
|
r:BCL101
|
2.0
|
22.4
|
1.0
|
|
NB
|
r:BCL101
|
2.1
|
22.4
|
1.0
|
|
NC
|
r:BCL101
|
2.1
|
22.4
|
1.0
|
|
NA
|
r:BCL101
|
2.2
|
22.4
|
1.0
|
|
NE2
|
r:HIS32
|
2.7
|
17.4
|
1.0
|
|
C4D
|
r:BCL101
|
3.0
|
22.4
|
1.0
|
|
C4B
|
r:BCL101
|
3.1
|
22.4
|
1.0
|
|
C1B
|
r:BCL101
|
3.1
|
22.4
|
1.0
|
|
C1C
|
r:BCL101
|
3.1
|
22.4
|
1.0
|
|
C4A
|
r:BCL101
|
3.1
|
22.4
|
1.0
|
|
C1D
|
r:BCL101
|
3.1
|
22.4
|
1.0
|
|
C4C
|
r:BCL101
|
3.1
|
22.4
|
1.0
|
|
C1A
|
r:BCL101
|
3.2
|
22.4
|
1.0
|
|
CD2
|
r:HIS32
|
3.4
|
17.4
|
1.0
|
|
CHC
|
r:BCL101
|
3.4
|
22.4
|
1.0
|
|
CHB
|
r:BCL101
|
3.4
|
22.4
|
1.0
|
|
CHA
|
r:BCL101
|
3.4
|
22.4
|
1.0
|
|
CHD
|
r:BCL101
|
3.5
|
22.4
|
1.0
|
|
CE1
|
r:HIS32
|
3.9
|
17.4
|
1.0
|
|
CBB
|
O:BCL101
|
4.2
|
14.3
|
1.0
|
|
C3D
|
r:BCL101
|
4.2
|
22.4
|
1.0
|
|
C2B
|
r:BCL101
|
4.2
|
22.4
|
1.0
|
|
C3B
|
r:BCL101
|
4.3
|
22.4
|
1.0
|
|
C2D
|
r:BCL101
|
4.3
|
22.4
|
1.0
|
|
C2C
|
r:BCL101
|
4.4
|
22.4
|
1.0
|
|
C3C
|
r:BCL101
|
4.4
|
22.4
|
1.0
|
|
C3A
|
r:BCL101
|
4.4
|
22.4
|
1.0
|
|
CMD
|
R:BCL101
|
4.4
|
25.6
|
1.0
|
|
C2A
|
r:BCL101
|
4.5
|
22.4
|
1.0
|
|
CG
|
r:HIS32
|
4.6
|
17.4
|
1.0
|
|
CMB
|
O:BCL101
|
4.7
|
14.3
|
1.0
|
|
ND1
|
r:HIS32
|
4.8
|
17.4
|
1.0
|
|
CBD
|
r:BCL101
|
4.9
|
22.4
|
1.0
|
|
Magnesium binding site 7 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 7 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Mg101
b:14.3
occ:1.00
|
MG
|
O:BCL101
|
0.0
|
14.3
|
1.0
|
|
ND
|
O:BCL101
|
2.0
|
14.3
|
1.0
|
|
NB
|
O:BCL101
|
2.1
|
14.3
|
1.0
|
|
NC
|
O:BCL101
|
2.1
|
14.3
|
1.0
|
|
NA
|
O:BCL101
|
2.2
|
14.3
|
1.0
|
|
NE2
|
O:HIS38
|
2.7
|
15.2
|
1.0
|
|
C4D
|
O:BCL101
|
3.0
|
14.3
|
1.0
|
|
C4B
|
O:BCL101
|
3.1
|
14.3
|
1.0
|
|
C1B
|
O:BCL101
|
3.1
|
14.3
|
1.0
|
|
C1C
|
O:BCL101
|
3.1
|
14.3
|
1.0
|
|
C4A
|
O:BCL101
|
3.1
|
14.3
|
1.0
|
|
C1D
|
O:BCL101
|
3.1
|
14.3
|
1.0
|
|
C4C
|
O:BCL101
|
3.1
|
14.3
|
1.0
|
|
CD2
|
O:HIS38
|
3.2
|
15.2
|
1.0
|
|
C1A
|
O:BCL101
|
3.2
|
14.3
|
1.0
|
|
CHC
|
O:BCL101
|
3.4
|
14.3
|
1.0
|
|
CHB
|
O:BCL101
|
3.4
|
14.3
|
1.0
|
|
CHA
|
O:BCL101
|
3.4
|
14.3
|
1.0
|
|
CHD
|
O:BCL101
|
3.5
|
14.3
|
1.0
|
|
CE1
|
O:HIS38
|
3.9
|
15.2
|
1.0
|
|
CBB
|
r:BCL101
|
4.1
|
22.4
|
1.0
|
|
C3D
|
O:BCL101
|
4.2
|
14.3
|
1.0
|
|
C2B
|
O:BCL101
|
4.3
|
14.3
|
1.0
|
|
CMB
|
r:BCL101
|
4.3
|
22.4
|
1.0
|
|
C3B
|
O:BCL101
|
4.3
|
14.3
|
1.0
|
|
C2D
|
O:BCL101
|
4.3
|
14.3
|
1.0
|
|
C2A
|
O:BCL101
|
4.4
|
14.3
|
1.0
|
|
C2C
|
O:BCL101
|
4.4
|
14.3
|
1.0
|
|
C3A
|
O:BCL101
|
4.4
|
14.3
|
1.0
|
|
C3C
|
O:BCL101
|
4.4
|
14.3
|
1.0
|
|
CG
|
O:HIS38
|
4.5
|
15.2
|
1.0
|
|
C11
|
O:BCL101
|
4.8
|
14.3
|
1.0
|
|
ND1
|
O:HIS38
|
4.8
|
15.2
|
1.0
|
|
C2B
|
r:BCL101
|
4.8
|
22.4
|
1.0
|
|
CAB
|
r:BCL101
|
4.9
|
22.4
|
1.0
|
|
CBD
|
O:BCL101
|
4.9
|
14.3
|
1.0
|
|
CAA
|
O:BCL101
|
4.9
|
14.3
|
1.0
|
|
Magnesium binding site 8 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 8 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mg101
b:16.6
occ:1.00
|
MG
|
a:BCL101
|
0.0
|
16.6
|
1.0
|
|
ND
|
a:BCL101
|
2.0
|
16.6
|
1.0
|
|
NB
|
a:BCL101
|
2.1
|
16.6
|
1.0
|
|
NC
|
a:BCL101
|
2.1
|
16.6
|
1.0
|
|
NA
|
a:BCL101
|
2.2
|
16.6
|
1.0
|
|
NE2
|
a:HIS32
|
2.7
|
11.7
|
1.0
|
|
C4D
|
a:BCL101
|
3.0
|
16.6
|
1.0
|
|
C4B
|
a:BCL101
|
3.1
|
16.6
|
1.0
|
|
C1B
|
a:BCL101
|
3.1
|
16.6
|
1.0
|
|
C1C
|
a:BCL101
|
3.1
|
16.6
|
1.0
|
|
C1D
|
a:BCL101
|
3.1
|
16.6
|
1.0
|
|
C4A
|
a:BCL101
|
3.1
|
16.6
|
1.0
|
|
C4C
|
a:BCL101
|
3.1
|
16.6
|
1.0
|
|
C1A
|
a:BCL101
|
3.2
|
16.6
|
1.0
|
|
CD2
|
a:HIS32
|
3.4
|
11.7
|
1.0
|
|
CHC
|
a:BCL101
|
3.4
|
16.6
|
1.0
|
|
CHB
|
a:BCL101
|
3.4
|
16.6
|
1.0
|
|
CHA
|
a:BCL101
|
3.4
|
16.6
|
1.0
|
|
CHD
|
a:BCL101
|
3.5
|
16.6
|
1.0
|
|
CE1
|
a:HIS32
|
3.8
|
11.7
|
1.0
|
|
C3D
|
a:BCL101
|
4.2
|
16.6
|
1.0
|
|
C2B
|
a:BCL101
|
4.3
|
16.6
|
1.0
|
|
C2D
|
a:BCL101
|
4.3
|
16.6
|
1.0
|
|
C3B
|
a:BCL101
|
4.3
|
16.6
|
1.0
|
|
C2C
|
a:BCL101
|
4.4
|
16.6
|
1.0
|
|
C3C
|
a:BCL101
|
4.4
|
16.6
|
1.0
|
|
C3A
|
a:BCL101
|
4.4
|
16.6
|
1.0
|
|
C2A
|
a:BCL101
|
4.4
|
16.6
|
1.0
|
|
CMD
|
A:BCL101
|
4.5
|
13.5
|
1.0
|
|
CG
|
a:HIS32
|
4.6
|
11.7
|
1.0
|
|
ND1
|
a:HIS32
|
4.8
|
11.7
|
1.0
|
|
CBD
|
a:BCL101
|
4.9
|
16.6
|
1.0
|
|
Magnesium binding site 9 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 9 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
e:Mg100
b:10.1
occ:1.00
|
MG
|
e:BCL100
|
0.0
|
10.1
|
1.0
|
|
ND
|
e:BCL100
|
2.0
|
10.1
|
1.0
|
|
NB
|
e:BCL100
|
2.1
|
10.1
|
1.0
|
|
NC
|
e:BCL100
|
2.1
|
10.1
|
1.0
|
|
NA
|
e:BCL100
|
2.2
|
10.1
|
1.0
|
|
NE2
|
e:HIS32
|
2.7
|
6.3
|
1.0
|
|
C4D
|
e:BCL100
|
3.0
|
10.1
|
1.0
|
|
C4B
|
e:BCL100
|
3.1
|
10.1
|
1.0
|
|
C1B
|
e:BCL100
|
3.1
|
10.1
|
1.0
|
|
C1C
|
e:BCL100
|
3.1
|
10.1
|
1.0
|
|
C4A
|
e:BCL100
|
3.1
|
10.1
|
1.0
|
|
C1D
|
e:BCL100
|
3.1
|
10.1
|
1.0
|
|
C4C
|
e:BCL100
|
3.1
|
10.1
|
1.0
|
|
C1A
|
e:BCL100
|
3.2
|
10.1
|
1.0
|
|
CHC
|
e:BCL100
|
3.4
|
10.1
|
1.0
|
|
CHB
|
e:BCL100
|
3.4
|
10.1
|
1.0
|
|
CD2
|
e:HIS32
|
3.4
|
6.3
|
1.0
|
|
CHA
|
e:BCL100
|
3.4
|
10.1
|
1.0
|
|
CHD
|
e:BCL100
|
3.5
|
10.1
|
1.0
|
|
CE1
|
e:HIS32
|
3.8
|
6.3
|
1.0
|
|
C3D
|
e:BCL100
|
4.2
|
10.1
|
1.0
|
|
CBB
|
D:BCL202
|
4.2
|
15.6
|
1.0
|
|
C2B
|
e:BCL100
|
4.2
|
10.1
|
1.0
|
|
C2D
|
e:BCL100
|
4.3
|
10.1
|
1.0
|
|
C3B
|
e:BCL100
|
4.3
|
10.1
|
1.0
|
|
C2C
|
e:BCL100
|
4.4
|
10.1
|
1.0
|
|
C3C
|
e:BCL100
|
4.4
|
10.1
|
1.0
|
|
C3A
|
e:BCL100
|
4.4
|
10.1
|
1.0
|
|
C2A
|
e:BCL100
|
4.5
|
10.1
|
1.0
|
|
CMB
|
D:BCL202
|
4.5
|
15.6
|
1.0
|
|
CMD
|
E:BCL202
|
4.5
|
10.8
|
1.0
|
|
CG
|
e:HIS32
|
4.7
|
6.3
|
1.0
|
|
ND1
|
e:HIS32
|
4.8
|
6.3
|
1.0
|
|
CBD
|
e:BCL100
|
4.9
|
10.1
|
1.0
|
|
Magnesium binding site 10 out
of 34 in 7ddq
Go back to
Magnesium Binding Sites List in 7ddq
Magnesium binding site 10 out
of 34 in the Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Rc-LH1-Pufx From Rhodobacter Veldkampii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg202
b:15.6
occ:1.00
|
MG
|
D:BCL202
|
0.0
|
15.6
|
1.0
|
|
ND
|
D:BCL202
|
2.0
|
15.6
|
1.0
|
|
NB
|
D:BCL202
|
2.1
|
15.6
|
1.0
|
|
NC
|
D:BCL202
|
2.1
|
15.6
|
1.0
|
|
NA
|
D:BCL202
|
2.2
|
15.6
|
1.0
|
|
NE2
|
D:HIS38
|
2.7
|
9.8
|
1.0
|
|
C4D
|
D:BCL202
|
3.0
|
15.6
|
1.0
|
|
C4B
|
D:BCL202
|
3.1
|
15.6
|
1.0
|
|
C1B
|
D:BCL202
|
3.1
|
15.6
|
1.0
|
|
C1C
|
D:BCL202
|
3.1
|
15.6
|
1.0
|
|
C4A
|
D:BCL202
|
3.1
|
15.6
|
1.0
|
|
C4C
|
D:BCL202
|
3.1
|
15.6
|
1.0
|
|
C1D
|
D:BCL202
|
3.1
|
15.6
|
1.0
|
|
C1A
|
D:BCL202
|
3.2
|
15.6
|
1.0
|
|
CD2
|
D:HIS38
|
3.3
|
9.8
|
1.0
|
|
CHC
|
D:BCL202
|
3.4
|
15.6
|
1.0
|
|
CHB
|
D:BCL202
|
3.4
|
15.6
|
1.0
|
|
CHA
|
D:BCL202
|
3.4
|
15.6
|
1.0
|
|
CHD
|
D:BCL202
|
3.5
|
15.6
|
1.0
|
|
CE1
|
D:HIS38
|
3.8
|
9.8
|
1.0
|
|
CBB
|
e:BCL100
|
4.1
|
10.1
|
1.0
|
|
C3D
|
D:BCL202
|
4.2
|
15.6
|
1.0
|
|
CMB
|
e:BCL100
|
4.2
|
10.1
|
1.0
|
|
C2B
|
D:BCL202
|
4.3
|
15.6
|
1.0
|
|
C2D
|
D:BCL202
|
4.3
|
15.6
|
1.0
|
|
C3B
|
D:BCL202
|
4.3
|
15.6
|
1.0
|
|
C2C
|
D:BCL202
|
4.4
|
15.6
|
1.0
|
|
C3C
|
D:BCL202
|
4.4
|
15.6
|
1.0
|
|
C2A
|
D:BCL202
|
4.4
|
15.6
|
1.0
|
|
C3A
|
D:BCL202
|
4.4
|
15.6
|
1.0
|
|
CG
|
D:HIS38
|
4.6
|
9.8
|
1.0
|
|
C10
|
D:BCL202
|
4.6
|
15.6
|
1.0
|
|
CAB
|
e:BCL100
|
4.7
|
10.1
|
1.0
|
|
C2B
|
e:BCL100
|
4.7
|
10.1
|
1.0
|
|
ND1
|
D:HIS38
|
4.8
|
9.8
|
1.0
|
|
C3B
|
e:BCL100
|
4.9
|
10.1
|
1.0
|
|
CBD
|
D:BCL202
|
4.9
|
15.6
|
1.0
|
|
Reference:
L.Bracun,
A.Yamagata,
B.M.Christianson,
T.Terada,
D.P.Canniffe,
M.Shirouzu,
L.N.Liu.
Cryo-Em Structure of the Photosynthetic Rc-LH1-Pufx Supercomplex at 2.8-Angstrom Resolution. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 34134992
DOI: 10.1126/SCIADV.ABF8864
Page generated: Sun Jul 11 16:29:49 2021
|
