Magnesium in PDB 7dfu: Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.

Enzymatic activity of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.

All present enzymatic activity of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.:
3.4.21.92;

Protein crystallography data

The structure of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4., PDB code: 7dfu was solved by C.-G.Yang, T.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	29.69 / 1.90
*Space group*	P 4₂ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	132.498, 132.498, 187.833, 90, 90, 90
*R / R_free (%)*	21.7 / 24.3

Other elements in 7dfu:

The structure of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. also contains other interesting chemical elements:

Fluorine	(F)	14 atoms
Chlorine	(Cl)	7 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. (pdb code 7dfu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4., PDB code: 7dfu:

Magnesium binding site 1 out of 1 in 7dfu

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Magnesium Binding Sites List in 7dfu

Magnesium binding site 1 out of 1 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mg402 b:32.1 occ:1.00	O	B:HOH545	2.6	20.7	1.0
	O	B:MET88	2.6	19.3	1.0
	O	B:PRO93	2.9	19.6	1.0
	O	B:ILE91	3.1	22.0	1.0
	C	B:MET88	3.8	14.6	1.0
	C	B:PRO93	4.0	17.2	1.0
	O	B:GLN89	4.0	18.7	1.0
	C	B:ILE91	4.2	22.6	1.0
	CG1	B:ILE91	4.2	20.0	1.0
	CG2	B:VAL95	4.2	13.3	1.0
	C	B:GLN89	4.3	16.0	1.0
	CA	B:GLN89	4.3	16.5	1.0
	N	B:VAL95	4.4	21.2	1.0
	O	B:LYS92	4.4	23.3	1.0
	CA	B:ASP94	4.4	20.9	1.0
	N	B:GLN89	4.6	15.6	1.0
	N	B:ASP94	4.6	15.7	1.0
	C	B:LYS92	4.7	22.9	1.0
	C	B:ASP94	4.7	20.9	1.0
	N	B:ILE91	4.7	19.4	1.0
	CB	B:VAL95	4.9	13.7	1.0
	CA	B:MET88	4.9	11.8	1.0
	CA	B:ILE91	4.9	20.9	1.0
	N	B:PRO93	5.0	20.9	1.0

Reference:

C.-G.Yang, T.Yang. Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. To Be Published.

Page generated: Wed Oct 2 15:51:03 2024

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