Magnesium in PDB 7dkz: Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Enzymatic activity of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
All present enzymatic activity of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex:
1.97.1.12;
Protein crystallography data
The structure of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex, PDB code: 7dkz
was solved by
J.Wang,
L.J.Yu,
W.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
44.41 /
2.39
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
225.652,
168.952,
185.224,
90,
121.39,
90
|
R / Rfree (%)
|
18.9 /
22.7
|
Other elements in 7dkz:
The structure of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
152;
Binding sites:
The binding sites of Magnesium atom in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
(pdb code 7dkz). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 152 binding sites of Magnesium where determined in the
Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex, PDB code: 7dkz:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 1 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg301
b:68.1
occ:1.00
|
MG
|
1:CLA301
|
0.0
|
68.1
|
1.0
|
NB
|
1:CLA301
|
2.0
|
65.6
|
1.0
|
ND
|
1:CLA301
|
2.0
|
70.9
|
1.0
|
NC
|
1:CLA301
|
2.1
|
69.5
|
1.0
|
NA
|
1:CLA301
|
2.1
|
72.1
|
1.0
|
OE2
|
1:GLU76
|
2.3
|
71.0
|
1.0
|
C4D
|
1:CLA301
|
2.9
|
69.1
|
1.0
|
C1B
|
1:CLA301
|
3.0
|
67.7
|
1.0
|
C4B
|
1:CLA301
|
3.1
|
75.0
|
1.0
|
C4A
|
1:CLA301
|
3.1
|
68.5
|
1.0
|
C1C
|
1:CLA301
|
3.1
|
68.2
|
1.0
|
C4C
|
1:CLA301
|
3.2
|
68.5
|
1.0
|
C1D
|
1:CLA301
|
3.2
|
66.6
|
1.0
|
C1A
|
1:CLA301
|
3.2
|
73.8
|
1.0
|
CD
|
1:GLU76
|
3.3
|
75.4
|
1.0
|
CHB
|
1:CLA301
|
3.4
|
71.1
|
1.0
|
CHC
|
1:CLA301
|
3.5
|
71.3
|
1.0
|
CHA
|
1:CLA301
|
3.5
|
75.2
|
1.0
|
C38
|
1:XAT315
|
3.5
|
67.3
|
1.0
|
CHD
|
1:CLA301
|
3.5
|
66.8
|
1.0
|
OE1
|
1:GLU76
|
4.0
|
71.9
|
1.0
|
CG
|
1:GLU76
|
4.2
|
69.1
|
1.0
|
NE
|
1:ARG185
|
4.2
|
76.9
|
1.0
|
C3D
|
1:CLA301
|
4.3
|
72.4
|
1.0
|
C2B
|
1:CLA301
|
4.3
|
70.3
|
1.0
|
C3B
|
1:CLA301
|
4.3
|
73.8
|
1.0
|
C2D
|
1:CLA301
|
4.4
|
65.8
|
1.0
|
C2C
|
1:CLA301
|
4.4
|
69.3
|
1.0
|
C3C
|
1:CLA301
|
4.4
|
67.8
|
1.0
|
NH2
|
1:ARG185
|
4.4
|
77.8
|
1.0
|
C3A
|
1:CLA301
|
4.4
|
67.8
|
1.0
|
C2A
|
1:CLA301
|
4.5
|
69.8
|
1.0
|
CZ
|
1:ARG185
|
4.6
|
78.4
|
1.0
|
CB
|
1:GLU76
|
4.9
|
72.7
|
1.0
|
CBD
|
1:CLA301
|
4.9
|
74.7
|
1.0
|
|
Magnesium binding site 2 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 2 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg302
b:81.3
occ:1.00
|
MG
|
1:CLA302
|
0.0
|
81.3
|
1.0
|
NB
|
1:CLA302
|
2.0
|
85.5
|
1.0
|
ND
|
1:CLA302
|
2.0
|
78.5
|
1.0
|
NA
|
1:CLA302
|
2.1
|
73.5
|
1.0
|
NC
|
1:CLA302
|
2.1
|
88.7
|
1.0
|
NE2
|
1:HIS79
|
2.7
|
79.2
|
1.0
|
C4D
|
1:CLA302
|
2.9
|
84.6
|
1.0
|
C1B
|
1:CLA302
|
3.0
|
81.2
|
1.0
|
C4A
|
1:CLA302
|
3.0
|
77.7
|
1.0
|
C4B
|
1:CLA302
|
3.1
|
87.3
|
1.0
|
C1C
|
1:CLA302
|
3.1
|
87.8
|
1.0
|
C1A
|
1:CLA302
|
3.1
|
74.7
|
1.0
|
C4C
|
1:CLA302
|
3.1
|
89.8
|
1.0
|
C1D
|
1:CLA302
|
3.2
|
84.1
|
1.0
|
CE1
|
1:HIS79
|
3.4
|
74.8
|
1.0
|
CHB
|
1:CLA302
|
3.4
|
78.0
|
1.0
|
CHC
|
1:CLA302
|
3.4
|
89.9
|
1.0
|
CHA
|
1:CLA302
|
3.5
|
82.6
|
1.0
|
CHD
|
1:CLA302
|
3.5
|
87.3
|
1.0
|
C11
|
1:CLA307
|
3.6
|
116.7
|
1.0
|
CD2
|
1:HIS79
|
3.8
|
78.0
|
1.0
|
C3D
|
1:CLA302
|
4.3
|
87.7
|
1.0
|
C2B
|
1:CLA302
|
4.3
|
87.2
|
1.0
|
C3B
|
1:CLA302
|
4.3
|
89.3
|
1.0
|
C2C
|
1:CLA302
|
4.3
|
89.7
|
1.0
|
C2D
|
1:CLA302
|
4.4
|
89.7
|
1.0
|
C3C
|
1:CLA302
|
4.4
|
94.6
|
1.0
|
C3A
|
1:CLA302
|
4.4
|
72.1
|
1.0
|
C12
|
1:CLA307
|
4.4
|
120.0
|
1.0
|
C2A
|
1:CLA302
|
4.5
|
71.0
|
1.0
|
ND1
|
1:HIS79
|
4.6
|
74.7
|
1.0
|
C8
|
1:CLA307
|
4.6
|
98.7
|
1.0
|
C10
|
1:CLA307
|
4.7
|
110.2
|
1.0
|
CMD
|
1:CLA307
|
4.8
|
74.8
|
1.0
|
CG
|
1:HIS79
|
4.9
|
73.2
|
1.0
|
CBB
|
1:CLA301
|
4.9
|
66.5
|
1.0
|
CBD
|
1:CLA302
|
4.9
|
86.8
|
1.0
|
C9
|
1:CLA307
|
5.0
|
90.5
|
1.0
|
|
Magnesium binding site 3 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 3 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg303
b:123.8
occ:1.00
|
MG
|
1:CLA303
|
0.0
|
123.8
|
1.0
|
NB
|
1:CLA303
|
2.0
|
119.2
|
1.0
|
ND
|
1:CLA303
|
2.0
|
129.4
|
1.0
|
NC
|
1:CLA303
|
2.1
|
123.8
|
1.0
|
NA
|
1:CLA303
|
2.1
|
124.4
|
1.0
|
O
|
1:HOH401
|
2.9
|
86.4
|
1.0
|
C4D
|
1:CLA303
|
2.9
|
130.8
|
1.0
|
C1B
|
1:CLA303
|
3.0
|
119.5
|
1.0
|
C4A
|
1:CLA303
|
3.0
|
124.0
|
1.0
|
C1C
|
1:CLA303
|
3.1
|
122.9
|
1.0
|
C4B
|
1:CLA303
|
3.1
|
117.9
|
1.0
|
C4C
|
1:CLA303
|
3.1
|
126.9
|
1.0
|
C1A
|
1:CLA303
|
3.2
|
126.0
|
1.0
|
C1D
|
1:CLA303
|
3.2
|
130.9
|
1.0
|
CHB
|
1:CLA303
|
3.4
|
123.6
|
1.0
|
CHC
|
1:CLA303
|
3.4
|
120.7
|
1.0
|
CHA
|
1:CLA303
|
3.5
|
129.4
|
1.0
|
C28
|
1:BCR316
|
3.5
|
114.2
|
1.0
|
CHD
|
1:CLA303
|
3.5
|
130.3
|
1.0
|
C27
|
1:BCR316
|
4.1
|
114.3
|
1.0
|
C3D
|
1:CLA303
|
4.3
|
132.5
|
1.0
|
C2B
|
1:CLA303
|
4.3
|
116.5
|
1.0
|
C3B
|
1:CLA303
|
4.3
|
116.2
|
1.0
|
C2C
|
1:CLA303
|
4.3
|
124.4
|
1.0
|
C3C
|
1:CLA303
|
4.4
|
127.6
|
1.0
|
C2D
|
1:CLA303
|
4.4
|
134.8
|
1.0
|
C3A
|
1:CLA303
|
4.4
|
120.8
|
1.0
|
C2A
|
1:CLA303
|
4.5
|
123.9
|
1.0
|
CA
|
1:GLY89
|
4.6
|
97.6
|
1.0
|
O
|
1:GLY89
|
4.7
|
103.7
|
1.0
|
C29
|
1:BCR316
|
4.7
|
113.1
|
1.0
|
C26
|
1:BCR316
|
4.8
|
110.8
|
1.0
|
CBA
|
1:CLA303
|
4.9
|
120.9
|
1.0
|
CE1
|
1:TYR117
|
4.9
|
119.8
|
1.0
|
CBD
|
1:CLA303
|
4.9
|
132.1
|
1.0
|
|
Magnesium binding site 4 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 4 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg304
b:107.8
occ:1.00
|
MG
|
1:CLA304
|
0.0
|
107.8
|
1.0
|
NB
|
1:CLA304
|
2.0
|
103.4
|
1.0
|
ND
|
1:CLA304
|
2.0
|
113.0
|
1.0
|
NA
|
1:CLA304
|
2.1
|
109.8
|
1.0
|
NC
|
1:CLA304
|
2.1
|
102.6
|
1.0
|
C4D
|
1:CLA304
|
2.9
|
115.8
|
1.0
|
C1B
|
1:CLA304
|
3.0
|
105.2
|
1.0
|
C4A
|
1:CLA304
|
3.0
|
109.3
|
1.0
|
C4B
|
1:CLA304
|
3.1
|
97.5
|
1.0
|
C1C
|
1:CLA304
|
3.1
|
98.0
|
1.0
|
C4C
|
1:CLA304
|
3.1
|
103.5
|
1.0
|
C1D
|
1:CLA304
|
3.2
|
114.9
|
1.0
|
C1A
|
1:CLA304
|
3.2
|
112.2
|
1.0
|
CHB
|
1:CLA304
|
3.4
|
107.5
|
1.0
|
CHC
|
1:CLA304
|
3.4
|
96.1
|
1.0
|
CHA
|
1:CLA304
|
3.5
|
116.5
|
1.0
|
CHD
|
1:CLA304
|
3.5
|
110.1
|
1.0
|
C3D
|
1:CLA304
|
4.3
|
119.7
|
1.0
|
C2B
|
1:CLA304
|
4.3
|
103.6
|
1.0
|
C3B
|
1:CLA304
|
4.3
|
102.1
|
1.0
|
C38
|
1:BCR316
|
4.3
|
108.2
|
1.0
|
C2C
|
1:CLA304
|
4.3
|
90.1
|
1.0
|
C2D
|
1:CLA304
|
4.4
|
119.2
|
1.0
|
C3C
|
1:CLA304
|
4.4
|
98.1
|
1.0
|
C3A
|
1:CLA304
|
4.4
|
110.5
|
1.0
|
C2A
|
1:CLA304
|
4.5
|
109.2
|
1.0
|
OE2
|
1:GLU134
|
4.7
|
120.1
|
1.0
|
CD
|
1:GLU134
|
4.9
|
116.3
|
1.0
|
CMB
|
1:CLA303
|
4.9
|
112.8
|
1.0
|
CBD
|
1:CLA304
|
5.0
|
122.1
|
1.0
|
|
Magnesium binding site 5 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 5 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg305
b:114.0
occ:1.00
|
MG
|
1:CHL305
|
0.0
|
114.0
|
1.0
|
NA
|
1:CHL305
|
2.0
|
114.5
|
1.0
|
ND
|
1:CHL305
|
2.0
|
116.5
|
1.0
|
NB
|
1:CHL305
|
2.1
|
106.6
|
1.0
|
NC
|
1:CHL305
|
2.1
|
114.0
|
1.0
|
OE1
|
1:GLN105
|
2.8
|
99.0
|
1.0
|
C4D
|
1:CHL305
|
2.9
|
120.2
|
1.0
|
C4A
|
1:CHL305
|
3.0
|
114.0
|
1.0
|
C1A
|
1:CHL305
|
3.0
|
114.5
|
1.0
|
C1B
|
1:CHL305
|
3.0
|
107.7
|
1.0
|
C1C
|
1:CHL305
|
3.1
|
112.4
|
1.0
|
C4B
|
1:CHL305
|
3.1
|
108.0
|
1.0
|
C4C
|
1:CHL305
|
3.1
|
112.8
|
1.0
|
C1D
|
1:CHL305
|
3.1
|
117.9
|
1.0
|
CHB
|
1:CHL305
|
3.3
|
110.0
|
1.0
|
CD
|
1:GLN105
|
3.3
|
97.5
|
1.0
|
CHA
|
1:CHL305
|
3.4
|
120.5
|
1.0
|
CHC
|
1:CHL305
|
3.4
|
110.6
|
1.0
|
NE2
|
1:GLN105
|
3.5
|
90.9
|
1.0
|
CHD
|
1:CHL305
|
3.5
|
113.5
|
1.0
|
C3D
|
1:CHL305
|
4.2
|
124.4
|
1.0
|
C3A
|
1:CHL305
|
4.3
|
113.0
|
1.0
|
C2A
|
1:CHL305
|
4.3
|
114.8
|
1.0
|
C2D
|
1:CHL305
|
4.4
|
120.9
|
1.0
|
C3B
|
1:CHL305
|
4.4
|
107.7
|
1.0
|
C2C
|
1:CHL305
|
4.4
|
112.4
|
1.0
|
C2B
|
1:CHL305
|
4.4
|
107.7
|
1.0
|
C3C
|
1:CHL305
|
4.4
|
112.3
|
1.0
|
CBA
|
1:CHL305
|
4.6
|
125.8
|
1.0
|
CG
|
1:GLN105
|
4.6
|
101.3
|
1.0
|
CMC
|
1:CLA304
|
4.8
|
80.6
|
1.0
|
CB
|
1:GLN105
|
4.9
|
107.3
|
1.0
|
CBD
|
1:CHL305
|
4.9
|
125.2
|
1.0
|
|
Magnesium binding site 6 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 6 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg306
b:102.3
occ:1.00
|
MG
|
1:CLA306
|
0.0
|
102.3
|
1.0
|
ND
|
1:CLA306
|
2.0
|
101.4
|
1.0
|
NB
|
1:CLA306
|
2.0
|
109.2
|
1.0
|
NC
|
1:CLA306
|
2.1
|
105.8
|
1.0
|
NA
|
1:CLA306
|
2.1
|
100.0
|
1.0
|
O
|
1:HOH403
|
2.8
|
113.5
|
1.0
|
C4D
|
1:CLA306
|
2.9
|
99.5
|
1.0
|
C1B
|
1:CLA306
|
3.0
|
108.0
|
1.0
|
C4B
|
1:CLA306
|
3.1
|
108.0
|
1.0
|
C4A
|
1:CLA306
|
3.1
|
100.6
|
1.0
|
C1C
|
1:CLA306
|
3.1
|
108.1
|
1.0
|
C1A
|
1:CLA306
|
3.2
|
98.5
|
1.0
|
C4C
|
1:CLA306
|
3.2
|
102.8
|
1.0
|
C1D
|
1:CLA306
|
3.2
|
103.5
|
1.0
|
CZ
|
1:PHE161
|
3.2
|
108.6
|
1.0
|
CHB
|
1:CLA306
|
3.4
|
102.2
|
1.0
|
CHC
|
1:CLA306
|
3.4
|
107.6
|
1.0
|
CHA
|
1:CLA306
|
3.5
|
98.6
|
1.0
|
CHD
|
1:CLA306
|
3.6
|
103.3
|
1.0
|
CE2
|
1:PHE161
|
3.8
|
106.4
|
1.0
|
CE1
|
1:PHE161
|
3.9
|
113.5
|
1.0
|
C3D
|
1:CLA306
|
4.2
|
99.6
|
1.0
|
C2B
|
1:CLA306
|
4.3
|
111.5
|
1.0
|
C3B
|
1:CLA306
|
4.3
|
112.7
|
1.0
|
C2C
|
1:CLA306
|
4.3
|
104.1
|
1.0
|
C2D
|
1:CLA306
|
4.4
|
100.5
|
1.0
|
C3C
|
1:CLA306
|
4.4
|
101.3
|
1.0
|
C3A
|
1:CLA306
|
4.4
|
96.2
|
1.0
|
C2A
|
1:CLA306
|
4.5
|
95.9
|
1.0
|
O
|
1:VAL141
|
4.8
|
95.7
|
1.0
|
CD2
|
1:PHE161
|
4.9
|
110.5
|
1.0
|
CBD
|
1:CLA306
|
4.9
|
99.4
|
1.0
|
CD1
|
1:PHE161
|
4.9
|
116.6
|
1.0
|
|
Magnesium binding site 7 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 7 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg307
b:91.7
occ:1.00
|
MG
|
1:CLA307
|
0.0
|
91.7
|
1.0
|
NB
|
1:CLA307
|
2.0
|
92.6
|
1.0
|
ND
|
1:CLA307
|
2.0
|
88.9
|
1.0
|
NC
|
1:CLA307
|
2.1
|
93.8
|
1.0
|
NA
|
1:CLA307
|
2.1
|
92.0
|
1.0
|
OE2
|
1:GLU142
|
2.6
|
87.5
|
1.0
|
C4D
|
1:CLA307
|
2.9
|
89.4
|
1.0
|
C1B
|
1:CLA307
|
3.0
|
91.5
|
1.0
|
C4A
|
1:CLA307
|
3.0
|
92.2
|
1.0
|
C1C
|
1:CLA307
|
3.1
|
95.5
|
1.0
|
C4B
|
1:CLA307
|
3.1
|
94.8
|
1.0
|
C4C
|
1:CLA307
|
3.2
|
93.2
|
1.0
|
C1A
|
1:CLA307
|
3.2
|
91.1
|
1.0
|
C1D
|
1:CLA307
|
3.2
|
88.7
|
1.0
|
CHB
|
1:CLA307
|
3.4
|
95.1
|
1.0
|
CHC
|
1:CLA307
|
3.4
|
93.9
|
1.0
|
CHA
|
1:CLA307
|
3.5
|
88.0
|
1.0
|
CHD
|
1:CLA307
|
3.5
|
92.7
|
1.0
|
CD
|
1:GLU142
|
3.6
|
90.3
|
1.0
|
CMD
|
1:CLA302
|
3.6
|
93.1
|
1.0
|
CG
|
1:GLU142
|
3.9
|
88.8
|
1.0
|
NH2
|
1:ARG145
|
4.0
|
106.2
|
1.0
|
C3D
|
1:CLA307
|
4.3
|
87.3
|
1.0
|
C2B
|
1:CLA307
|
4.3
|
94.1
|
1.0
|
C2C
|
1:CLA307
|
4.3
|
92.8
|
1.0
|
C3B
|
1:CLA307
|
4.3
|
100.7
|
1.0
|
C3C
|
1:CLA307
|
4.4
|
91.2
|
1.0
|
C2D
|
1:CLA307
|
4.4
|
84.7
|
1.0
|
C3A
|
1:CLA307
|
4.4
|
89.0
|
1.0
|
C2A
|
1:CLA307
|
4.5
|
92.2
|
1.0
|
CB
|
1:GLU142
|
4.5
|
89.2
|
1.0
|
C15
|
G:LHG102
|
4.5
|
105.5
|
1.0
|
C2D
|
1:CLA302
|
4.8
|
89.7
|
1.0
|
C18
|
G:LHG102
|
4.8
|
118.4
|
1.0
|
OE1
|
1:GLU142
|
4.8
|
90.8
|
1.0
|
CBD
|
1:CLA307
|
4.9
|
86.3
|
1.0
|
|
Magnesium binding site 8 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 8 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg308
b:97.0
occ:1.00
|
MG
|
1:CLA308
|
0.0
|
97.0
|
1.0
|
NB
|
1:CLA308
|
2.0
|
94.8
|
1.0
|
ND
|
1:CLA308
|
2.0
|
97.7
|
1.0
|
NC
|
1:CLA308
|
2.1
|
95.8
|
1.0
|
NA
|
1:CLA308
|
2.1
|
95.7
|
1.0
|
OE2
|
1:GLU180
|
2.7
|
100.3
|
1.0
|
C4D
|
1:CLA308
|
2.9
|
101.8
|
1.0
|
C1B
|
1:CLA308
|
3.0
|
95.3
|
1.0
|
C4A
|
1:CLA308
|
3.1
|
94.9
|
1.0
|
C4B
|
1:CLA308
|
3.1
|
93.9
|
1.0
|
C1C
|
1:CLA308
|
3.1
|
93.2
|
1.0
|
C4C
|
1:CLA308
|
3.1
|
94.6
|
1.0
|
C1A
|
1:CLA308
|
3.1
|
98.9
|
1.0
|
C1D
|
1:CLA308
|
3.2
|
96.0
|
1.0
|
CHB
|
1:CLA308
|
3.4
|
92.1
|
1.0
|
CHC
|
1:CLA308
|
3.4
|
93.1
|
1.0
|
CHA
|
1:CLA308
|
3.5
|
103.5
|
1.0
|
CHD
|
1:CLA308
|
3.5
|
94.4
|
1.0
|
CD
|
1:GLU180
|
3.6
|
99.4
|
1.0
|
C38
|
1:LUT314
|
3.9
|
108.7
|
1.0
|
CG
|
1:GLU180
|
4.0
|
96.4
|
1.0
|
C3D
|
1:CLA308
|
4.3
|
104.2
|
1.0
|
C2B
|
1:CLA308
|
4.3
|
96.8
|
1.0
|
C3B
|
1:CLA308
|
4.3
|
96.1
|
1.0
|
C2C
|
1:CLA308
|
4.3
|
91.6
|
1.0
|
NE
|
1:ARG81
|
4.3
|
81.6
|
1.0
|
C3C
|
1:CLA308
|
4.4
|
91.3
|
1.0
|
C2D
|
1:CLA308
|
4.4
|
100.4
|
1.0
|
C3A
|
1:CLA308
|
4.4
|
94.4
|
1.0
|
C2A
|
1:CLA308
|
4.5
|
97.5
|
1.0
|
OE1
|
1:GLU180
|
4.5
|
101.0
|
1.0
|
C28
|
1:LUT314
|
4.6
|
111.9
|
1.0
|
O2A
|
1:CLA308
|
4.7
|
111.8
|
1.0
|
NH2
|
1:ARG81
|
4.7
|
91.4
|
1.0
|
CZ
|
1:ARG81
|
4.8
|
89.5
|
1.0
|
CBD
|
1:CLA308
|
4.9
|
107.3
|
1.0
|
CBA
|
1:CLA308
|
4.9
|
107.3
|
1.0
|
CB
|
1:GLU180
|
5.0
|
95.2
|
1.0
|
CD
|
1:ARG81
|
5.0
|
72.3
|
1.0
|
|
Magnesium binding site 9 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 9 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg309
b:97.0
occ:1.00
|
MG
|
1:CLA309
|
0.0
|
97.0
|
1.0
|
NB
|
1:CLA309
|
2.0
|
99.2
|
1.0
|
ND
|
1:CLA309
|
2.0
|
98.8
|
1.0
|
NC
|
1:CLA309
|
2.1
|
91.5
|
1.0
|
NA
|
1:CLA309
|
2.1
|
98.8
|
1.0
|
O4
|
1:LHG317
|
2.5
|
118.1
|
1.0
|
C4D
|
1:CLA309
|
2.9
|
101.0
|
1.0
|
C1B
|
1:CLA309
|
3.0
|
102.5
|
1.0
|
C4A
|
1:CLA309
|
3.1
|
102.4
|
1.0
|
C1C
|
1:CLA309
|
3.1
|
91.2
|
1.0
|
C4B
|
1:CLA309
|
3.1
|
96.3
|
1.0
|
C4C
|
1:CLA309
|
3.1
|
87.2
|
1.0
|
C1D
|
1:CLA309
|
3.2
|
92.3
|
1.0
|
C1A
|
1:CLA309
|
3.2
|
101.5
|
1.0
|
CHB
|
1:CLA309
|
3.4
|
105.1
|
1.0
|
O6
|
1:LHG317
|
3.4
|
111.9
|
1.0
|
CHC
|
1:CLA309
|
3.4
|
90.5
|
1.0
|
CHA
|
1:CLA309
|
3.5
|
103.5
|
1.0
|
CHD
|
1:CLA309
|
3.5
|
89.3
|
1.0
|
P
|
1:LHG317
|
3.6
|
115.2
|
1.0
|
NZ
|
1:LYS182
|
4.2
|
88.5
|
1.0
|
C3D
|
1:CLA309
|
4.3
|
100.2
|
1.0
|
C2B
|
1:CLA309
|
4.3
|
100.8
|
1.0
|
C3B
|
1:CLA309
|
4.3
|
100.2
|
1.0
|
C2C
|
1:CLA309
|
4.3
|
87.6
|
1.0
|
C2D
|
1:CLA309
|
4.4
|
92.1
|
1.0
|
C3C
|
1:CLA309
|
4.4
|
86.8
|
1.0
|
CMD
|
1:CLA310
|
4.4
|
102.8
|
1.0
|
C3A
|
1:CLA309
|
4.4
|
104.2
|
1.0
|
O3
|
1:LHG317
|
4.5
|
121.0
|
1.0
|
C2A
|
1:CLA309
|
4.5
|
105.2
|
1.0
|
C6
|
1:LHG317
|
4.6
|
101.0
|
1.0
|
C4
|
1:LHG317
|
4.7
|
107.4
|
1.0
|
CE
|
1:LYS182
|
4.8
|
88.7
|
1.0
|
C5
|
1:LHG317
|
4.9
|
102.3
|
1.0
|
O5
|
1:LHG317
|
4.9
|
113.5
|
1.0
|
CBD
|
1:CLA309
|
4.9
|
107.9
|
1.0
|
|
Magnesium binding site 10 out
of 152 in 7dkz
Go back to
Magnesium Binding Sites List in 7dkz
Magnesium binding site 10 out
of 152 in the Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg310
b:102.8
occ:1.00
|
MG
|
1:CLA310
|
0.0
|
102.8
|
1.0
|
NB
|
1:CLA310
|
2.0
|
98.3
|
1.0
|
ND
|
1:CLA310
|
2.0
|
97.4
|
1.0
|
NC
|
1:CLA310
|
2.1
|
93.7
|
1.0
|
NA
|
1:CLA310
|
2.1
|
103.6
|
1.0
|
OD1
|
1:ASN183
|
2.7
|
100.7
|
1.0
|
C4D
|
1:CLA310
|
2.9
|
99.2
|
1.0
|
C1B
|
1:CLA310
|
3.0
|
100.4
|
1.0
|
C4A
|
1:CLA310
|
3.0
|
105.3
|
1.0
|
C4B
|
1:CLA310
|
3.1
|
96.2
|
1.0
|
C1C
|
1:CLA310
|
3.1
|
93.5
|
1.0
|
C4C
|
1:CLA310
|
3.1
|
92.2
|
1.0
|
C1D
|
1:CLA310
|
3.2
|
98.6
|
1.0
|
C1A
|
1:CLA310
|
3.2
|
105.3
|
1.0
|
CHB
|
1:CLA310
|
3.4
|
103.8
|
1.0
|
C8
|
1:CLA309
|
3.4
|
124.4
|
1.0
|
CHC
|
1:CLA310
|
3.4
|
93.7
|
1.0
|
CHA
|
1:CLA310
|
3.5
|
103.9
|
1.0
|
CHD
|
1:CLA310
|
3.5
|
96.7
|
1.0
|
CG
|
1:ASN183
|
3.6
|
96.3
|
1.0
|
C9
|
1:CLA309
|
3.7
|
122.1
|
1.0
|
C10
|
1:CLA309
|
3.9
|
129.8
|
1.0
|
ND2
|
1:ASN183
|
4.1
|
97.2
|
1.0
|
C3D
|
1:CLA310
|
4.2
|
99.7
|
1.0
|
C2B
|
1:CLA310
|
4.3
|
98.4
|
1.0
|
C3B
|
1:CLA310
|
4.3
|
98.2
|
1.0
|
C2C
|
1:CLA310
|
4.3
|
91.5
|
1.0
|
C2D
|
1:CLA310
|
4.4
|
100.8
|
1.0
|
C3C
|
1:CLA310
|
4.4
|
91.7
|
1.0
|
C3A
|
1:CLA310
|
4.4
|
109.0
|
1.0
|
C2A
|
1:CLA310
|
4.5
|
109.4
|
1.0
|
C7
|
1:CLA309
|
4.6
|
124.9
|
1.0
|
C6
|
1:CLA309
|
4.7
|
125.9
|
1.0
|
CB
|
1:ASN183
|
4.9
|
92.6
|
1.0
|
CBD
|
1:CLA310
|
4.9
|
106.8
|
1.0
|
|
Reference:
W.Wang,
J.R.Shen.
Structure of Plant Photosystem I-Light Harvesting Complex I Supercomplex at 2.4 A Resolution To Be Published.
Page generated: Wed Oct 2 15:55:01 2024
|