Magnesium in PDB 7dn0: Aj-Gmpcpp-Mt-Non-Seam

The binding sites of Magnesium atom in the Aj-Gmpcpp-Mt-Non-Seam (pdb code 7dn0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Aj-Gmpcpp-Mt-Non-Seam, PDB code: 7dn0:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Aj-Gmpcpp-Mt-Non-Seam


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Aj-Gmpcpp-Mt-Non-Seam within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:40.9 occ:1.00 O1G D:GTP501 2.1 38.0 1.0 OE1 D:GLU71 2.9 44.5 1.0 O1B D:GTP501 3.2 38.0 1.0 PG D:GTP501 3.4 38.0 1.0 O2G D:GTP501 3.7 38.0 1.0 OE1 D:GLN11 3.8 33.1 1.0 O3B D:GTP501 4.0 38.0 1.0 CD D:GLU71 4.1 44.5 1.0 PB D:GTP501 4.2 38.0 1.0 CB D:GLN11 4.3 33.1 1.0 OD2 D:ASP69 4.5 43.4 1.0 OD1 D:ASP69 4.6 43.4 1.0 O3G D:GTP501 4.6 38.0 1.0 CB D:GLU71 4.6 44.5 1.0 OE2 D:GLU71 4.8 44.5 1.0 CB D:ASP98 4.8 49.8 1.0 CD D:GLN11 4.9 33.1 1.0 N D:GLN11 5.0 33.1 1.0 CG D:GLU71 5.0 44.5 1.0 CG D:ASP69 5.0 43.4 1.0

Magnesium binding site 2 out of 4 in the Aj-Gmpcpp-Mt-Non-Seam


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Aj-Gmpcpp-Mt-Non-Seam within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:27.8 occ:1.00 O1G A:GTP501 2.8 31.3 1.0 OE1 A:GLU71 2.8 34.4 1.0 O1B A:GTP501 3.1 31.3 1.0 OE1 A:GLN11 3.7 29.3 1.0 OD1 F:ASN249 3.7 28.2 1.0 PG A:GTP501 3.8 31.3 1.0 O2G A:GTP501 3.9 31.3 1.0 CD A:GLU71 3.9 34.4 1.0 CB A:GLN11 4.1 29.3 1.0 O3B A:GTP501 4.2 31.3 1.0 NZ F:LYS254 4.2 23.6 1.0 PB A:GTP501 4.3 31.3 1.0 CD A:GLN11 4.5 29.3 1.0 OE2 A:GLU71 4.5 34.4 1.0 CG F:ASN249 4.6 28.2 1.0 OD1 A:ASP69 4.7 36.4 1.0 CG2 A:VAL74 4.7 33.0 1.0 CG A:GLN11 4.8 29.3 1.0 ND2 F:ASN249 4.9 28.2 1.0 CB A:GLU71 4.9 34.4 1.0 OD2 A:ASP98 5.0 33.3 1.0 O F:ASN249 5.0 28.2 1.0

Magnesium binding site 3 out of 4 in the Aj-Gmpcpp-Mt-Non-Seam


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Aj-Gmpcpp-Mt-Non-Seam within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:47.4 occ:1.00 O1G B:GTP501 2.1 44.0 1.0 O1B B:GTP501 2.4 44.0 1.0 PG B:GTP501 3.0 44.0 1.0 O2G B:GTP501 3.3 44.0 1.0 O3B B:GTP501 3.3 44.0 1.0 OE1 B:GLU71 3.4 54.2 1.0 PB B:GTP501 3.4 44.0 1.0 OE1 B:GLN11 4.0 39.9 1.0 CD B:GLU71 4.3 54.2 1.0 O3G B:GTP501 4.4 44.0 1.0 O3A B:GTP501 4.4 44.0 1.0 CB B:GLN11 4.5 39.9 1.0 O2B B:GTP501 4.6 44.0 1.0 CB B:GLU71 4.6 54.2 1.0

Magnesium binding site 4 out of 4 in the Aj-Gmpcpp-Mt-Non-Seam


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Aj-Gmpcpp-Mt-Non-Seam within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:27.2 occ:1.00 O1G C:GTP501 2.1 26.8 1.0 O1B C:GTP501 2.1 26.8 1.0 PG C:GTP501 3.1 26.8 1.0 PB C:GTP501 3.3 26.8 1.0 O3B C:GTP501 3.3 26.8 1.0 OE1 C:GLU71 3.6 31.2 1.0 O2G C:GTP501 3.7 26.8 1.0 OE1 C:GLN11 3.8 25.7 1.0 O3A C:GTP501 4.2 26.8 1.0 O2B C:GTP501 4.4 26.8 1.0 O3G C:GTP501 4.4 26.8 1.0 OD1 E:ASN249 4.4 24.2 1.0 CB C:GLN11 4.6 25.7 1.0 CD C:GLU71 4.7 31.2 1.0 CD C:GLN11 4.8 25.7 1.0 O E:ASN249 4.9 24.2 1.0

Y.X.Wang, Y.X.Wang. N/A N/A.