Magnesium in PDB 7dr1: Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa

All present enzymatic activity of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa:
1.97.1.12;

The structure of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 81;

Binding sites:

The binding sites of Magnesium atom in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa (pdb code 7dr1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 81 binding sites of Magnesium where determined in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa, PDB code: 7dr1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:16.5 occ:1.00 MG A:CL0801 0.0 16.5 1.0 ND A:CL0801 2.0 16.5 1.0 NB A:CL0801 2.0 16.5 1.0 NC A:CL0801 2.1 16.5 1.0 NA A:CL0801 2.1 16.5 1.0 NE2 A:HIS677 2.3 16.9 1.0 C4D A:CL0801 3.0 16.5 1.0 C4A A:CL0801 3.0 16.5 1.0 C1C A:CL0801 3.0 16.5 1.0 C1B A:CL0801 3.0 16.5 1.0 C4B A:CL0801 3.0 16.5 1.0 C1A A:CL0801 3.1 16.5 1.0 CE1 A:HIS677 3.1 16.9 1.0 C4C A:CL0801 3.1 16.5 1.0 C1D A:CL0801 3.2 16.5 1.0 CHB A:CL0801 3.3 16.5 1.0 CD2 A:HIS677 3.4 16.9 1.0 CHC A:CL0801 3.4 16.5 1.0 CHA A:CL0801 3.5 16.5 1.0 CHD A:CL0801 3.7 16.5 1.0 CAB B:CLA803 4.0 16.9 1.0 C3B B:CLA803 4.1 16.9 1.0 C3D A:CL0801 4.2 16.5 1.0 ND1 A:HIS677 4.3 16.9 1.0 C3A A:CL0801 4.3 16.5 1.0 C3B A:CL0801 4.3 16.5 1.0 C2B A:CL0801 4.3 16.5 1.0 C2C A:CL0801 4.4 16.5 1.0 C2A A:CL0801 4.4 16.5 1.0 C3C A:CL0801 4.4 16.5 1.0 CG A:HIS677 4.5 16.9 1.0 C4B B:CLA803 4.5 16.9 1.0 C2D A:CL0801 4.5 16.5 1.0 CHC B:CLA803 4.5 16.9 1.0 CZ B:PHE623 4.5 20.4 1.0 CMA A:CL0801 4.8 16.5 1.0 C2B B:CLA803 4.8 16.9 1.0 CBD A:CL0801 4.9 16.5 1.0

Magnesium binding site 2 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:17.1 occ:1.00 MG A:CLA802 0.0 17.1 1.0 ND A:CLA802 2.0 17.1 1.0 NB A:CLA802 2.0 17.1 1.0 NC A:CLA802 2.1 17.1 1.0 NA A:CLA802 2.1 17.1 1.0 SD A:MET685 2.3 16.1 1.0 C4A A:CLA802 3.0 17.1 1.0 C4D A:CLA802 3.0 17.1 1.0 C1B A:CLA802 3.0 17.1 1.0 C1C A:CLA802 3.0 17.1 1.0 C4B A:CLA802 3.0 17.1 1.0 C1A A:CLA802 3.1 17.1 1.0 C4C A:CLA802 3.1 17.1 1.0 CE A:MET685 3.2 16.1 1.0 C1D A:CLA802 3.2 17.1 1.0 CG A:MET685 3.3 16.1 1.0 CHB A:CLA802 3.4 17.1 1.0 CHC A:CLA802 3.4 17.1 1.0 CHA A:CLA802 3.5 17.1 1.0 CHD A:CLA802 3.7 17.1 1.0 NE1 B:TRP585 3.8 17.9 1.0 CB A:MET685 3.9 16.1 1.0 CZ2 B:TRP585 4.2 17.9 1.0 C3D A:CLA802 4.3 17.1 1.0 C2B A:CLA802 4.3 17.1 1.0 C3B A:CLA802 4.3 17.1 1.0 C3A A:CLA802 4.4 17.1 1.0 C2C A:CLA802 4.4 17.1 1.0 CE2 B:TRP585 4.4 17.9 1.0 C2A A:CLA802 4.4 17.1 1.0 C3C A:CLA802 4.4 17.1 1.0 C2D A:CLA802 4.5 17.1 1.0 CH2 A:TRP694 4.8 20.6 1.0 CBD A:CLA802 4.9 17.1 1.0 CD1 B:TRP585 5.0 17.9 1.0 CA A:MET685 5.0 16.1 1.0

Magnesium binding site 3 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:28.6 occ:1.00 MG A:CLA803 0.0 28.6 1.0 ND A:CLA803 2.0 28.6 1.0 NB A:CLA803 2.0 28.6 1.0 NC A:CLA803 2.1 28.6 1.0 NA A:CLA803 2.1 28.6 1.0 NE2 A:HIS53 2.2 26.7 1.0 C4D A:CLA803 3.0 28.6 1.0 C1C A:CLA803 3.0 28.6 1.0 C4A A:CLA803 3.0 28.6 1.0 C1B A:CLA803 3.0 28.6 1.0 CE1 A:HIS53 3.0 26.7 1.0 C4B A:CLA803 3.0 28.6 1.0 C1A A:CLA803 3.1 28.6 1.0 C4C A:CLA803 3.2 28.6 1.0 C1D A:CLA803 3.3 28.6 1.0 CD2 A:HIS53 3.3 26.7 1.0 CHB A:CLA803 3.4 28.6 1.0 CHC A:CLA803 3.4 28.6 1.0 CHA A:CLA803 3.5 28.6 1.0 CB J:PRO11 3.6 34.9 1.0 CHD A:CLA803 3.7 28.6 1.0 CG J:PRO11 3.7 34.9 1.0 ND1 A:HIS53 4.2 26.7 1.0 C3D A:CLA803 4.3 28.6 1.0 C2C A:CLA803 4.3 28.6 1.0 C3B A:CLA803 4.3 28.6 1.0 C2B A:CLA803 4.3 28.6 1.0 CG A:HIS53 4.4 26.7 1.0 C3A A:CLA803 4.4 28.6 1.0 C2A A:CLA803 4.4 28.6 1.0 C3C A:CLA803 4.4 28.6 1.0 C2D A:CLA803 4.5 28.6 1.0 CD J:PRO11 4.6 34.9 1.0 CBD A:CLA803 4.9 28.6 1.0

Magnesium binding site 4 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:24.7 occ:1.00 MG A:CLA804 0.0 24.7 1.0 ND A:CLA804 2.0 24.7 1.0 NB A:CLA804 2.0 24.7 1.0 NC A:CLA804 2.1 24.7 1.0 NA A:CLA804 2.1 24.7 1.0 NE2 A:HIS57 2.3 22.4 1.0 CE1 A:HIS57 2.8 22.4 1.0 C4D A:CLA804 3.0 24.7 1.0 C1C A:CLA804 3.0 24.7 1.0 C4A A:CLA804 3.0 24.7 1.0 C1B A:CLA804 3.0 24.7 1.0 C4B A:CLA804 3.0 24.7 1.0 C1A A:CLA804 3.1 24.7 1.0 C4C A:CLA804 3.1 24.7 1.0 C1D A:CLA804 3.3 24.7 1.0 CHB A:CLA804 3.4 24.7 1.0 CHC A:CLA804 3.4 24.7 1.0 CHA A:CLA804 3.5 24.7 1.0 CD2 A:HIS57 3.5 22.4 1.0 CHD A:CLA804 3.7 24.7 1.0 ND1 A:HIS57 4.1 22.4 1.0 C7 A:CLA811 4.1 29.4 1.0 C3D A:CLA804 4.3 24.7 1.0 C2C A:CLA804 4.3 24.7 1.0 C3B A:CLA804 4.3 24.7 1.0 C2B A:CLA804 4.4 24.7 1.0 C3A A:CLA804 4.4 24.7 1.0 C3C A:CLA804 4.4 24.7 1.0 C2A A:CLA804 4.4 24.7 1.0 CG A:HIS57 4.4 22.4 1.0 C2D A:CLA804 4.5 24.7 1.0 C10 A:CLA811 4.8 29.4 1.0 CBD A:CLA804 4.9 24.7 1.0

Magnesium binding site 5 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:21.1 occ:1.00 MG A:CLA805 0.0 21.1 1.0 ND A:CLA805 2.0 21.1 1.0 NB A:CLA805 2.0 21.1 1.0 NC A:CLA805 2.1 21.1 1.0 NA A:CLA805 2.1 21.1 1.0 NE2 A:HIS77 2.2 23.3 1.0 CD2 A:HIS77 2.8 23.3 1.0 C4D A:CLA805 3.0 21.1 1.0 C1C A:CLA805 3.0 21.1 1.0 C4A A:CLA805 3.0 21.1 1.0 C4B A:CLA805 3.0 21.1 1.0 C1B A:CLA805 3.0 21.1 1.0 C1A A:CLA805 3.1 21.1 1.0 C4C A:CLA805 3.1 21.1 1.0 C1D A:CLA805 3.3 21.1 1.0 CE1 A:HIS77 3.3 23.3 1.0 CHB A:CLA805 3.4 21.1 1.0 CHC A:CLA805 3.4 21.1 1.0 CMB A:CLA830 3.4 19.1 1.0 CHA A:CLA805 3.5 21.1 1.0 CHD A:CLA805 3.7 21.1 1.0 CG A:HIS77 4.0 23.3 1.0 ND1 A:HIS77 4.2 23.3 1.0 C3D A:CLA805 4.3 21.1 1.0 C2C A:CLA805 4.3 21.1 1.0 C3B A:CLA805 4.4 21.1 1.0 C3A A:CLA805 4.4 21.1 1.0 C2B A:CLA805 4.4 21.1 1.0 C2A A:CLA805 4.4 21.1 1.0 CG2 A:ILE73 4.4 24.3 1.0 C3C A:CLA805 4.4 21.1 1.0 C2D A:CLA805 4.5 21.1 1.0 C2B A:CLA830 4.8 19.1 1.0 CBD A:CLA805 4.9 21.1 1.0

Magnesium binding site 6 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:18.4 occ:1.00 MG A:CLA806 0.0 18.4 1.0 ND A:CLA806 2.0 18.4 1.0 NB A:CLA806 2.0 18.4 1.0 NC A:CLA806 2.1 18.4 1.0 NA A:CLA806 2.1 18.4 1.0 NE2 A:HIS80 2.2 22.0 1.0 C4D A:CLA806 3.0 18.4 1.0 C1C A:CLA806 3.0 18.4 1.0 C4B A:CLA806 3.0 18.4 1.0 C4A A:CLA806 3.0 18.4 1.0 C1B A:CLA806 3.0 18.4 1.0 C1A A:CLA806 3.1 18.4 1.0 CE1 A:HIS80 3.1 22.0 1.0 C4C A:CLA806 3.1 18.4 1.0 CD2 A:HIS80 3.3 22.0 1.0 C1D A:CLA806 3.3 18.4 1.0 CHC A:CLA806 3.4 18.4 1.0 CHB A:CLA806 3.4 18.4 1.0 CHA A:CLA806 3.4 18.4 1.0 C16 A:CLA806 3.6 18.4 1.0 CHD A:CLA806 3.7 18.4 1.0 C17 A:CLA806 4.1 18.4 1.0 ND1 A:HIS80 4.2 22.0 1.0 C3D A:CLA806 4.2 18.4 1.0 C3B A:CLA806 4.3 18.4 1.0 C2C A:CLA806 4.3 18.4 1.0 CG A:HIS80 4.4 22.0 1.0 C2B A:CLA806 4.4 18.4 1.0 C3A A:CLA806 4.4 18.4 1.0 C2A A:CLA806 4.4 18.4 1.0 C3C A:CLA806 4.4 18.4 1.0 C2D A:CLA806 4.5 18.4 1.0 CMA A:CLA805 4.7 21.1 1.0 C15 A:CLA806 4.8 18.4 1.0 CBD A:CLA806 4.9 18.4 1.0

Magnesium binding site 7 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:30.4 occ:1.00 MG A:CLA807 0.0 30.4 1.0 ND A:CLA807 2.0 30.4 1.0 NB A:CLA807 2.0 30.4 1.0 NC A:CLA807 2.1 30.4 1.0 NA A:CLA807 2.1 30.4 1.0 NE2 A:HIS94 2.2 29.6 1.0 C4D A:CLA807 3.0 30.4 1.0 C1C A:CLA807 3.0 30.4 1.0 CE1 A:HIS94 3.0 29.6 1.0 C4B A:CLA807 3.0 30.4 1.0 C4A A:CLA807 3.0 30.4 1.0 C1B A:CLA807 3.0 30.4 1.0 C1A A:CLA807 3.1 30.4 1.0 C4C A:CLA807 3.1 30.4 1.0 C1D A:CLA807 3.3 30.4 1.0 CHC A:CLA807 3.4 30.4 1.0 CD2 A:HIS94 3.4 29.6 1.0 CHB A:CLA807 3.4 30.4 1.0 CHA A:CLA807 3.5 30.4 1.0 CHD A:CLA807 3.7 30.4 1.0 ND1 A:HIS94 4.2 29.6 1.0 C3D A:CLA807 4.2 30.4 1.0 C3B A:CLA807 4.3 30.4 1.0 C2C A:CLA807 4.4 30.4 1.0 C2B A:CLA807 4.4 30.4 1.0 C3A A:CLA807 4.4 30.4 1.0 C2A A:CLA807 4.4 30.4 1.0 C3C A:CLA807 4.4 30.4 1.0 CG A:HIS94 4.4 29.6 1.0 C2D A:CLA807 4.5 30.4 1.0 CBD A:CLA807 4.9 30.4 1.0

Magnesium binding site 8 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:24.3 occ:1.00 MG A:CLA808 0.0 24.3 1.0 ND A:CLA808 2.0 24.3 1.0 NB A:CLA808 2.0 24.3 1.0 NC A:CLA808 2.1 24.3 1.0 NA A:CLA808 2.1 24.3 1.0 OE1 A:GLN116 2.2 26.2 1.0 C4D A:CLA808 3.0 24.3 1.0 C1C A:CLA808 3.0 24.3 1.0 C4A A:CLA808 3.0 24.3 1.0 C1B A:CLA808 3.0 24.3 1.0 C4B A:CLA808 3.0 24.3 1.0 CD A:GLN116 3.1 26.2 1.0 C1A A:CLA808 3.1 24.3 1.0 C4C A:CLA808 3.1 24.3 1.0 C1D A:CLA808 3.3 24.3 1.0 CHB A:CLA808 3.4 24.3 1.0 CHC A:CLA808 3.4 24.3 1.0 NE2 A:GLN116 3.5 26.2 1.0 CHA A:CLA808 3.5 24.3 1.0 CHD A:CLA808 3.7 24.3 1.0 C6 A:CLA828 3.9 20.3 1.0 C3D A:CLA808 4.3 24.3 1.0 CG A:GLN116 4.3 26.2 1.0 C3B A:CLA808 4.4 24.3 1.0 C2B A:CLA808 4.4 24.3 1.0 C2C A:CLA808 4.4 24.3 1.0 C3A A:CLA808 4.4 24.3 1.0 C2A A:CLA808 4.4 24.3 1.0 C3C A:CLA808 4.4 24.3 1.0 C2D A:CLA808 4.5 24.3 1.0 C5 A:CLA828 4.6 20.3 1.0 C4 A:CLA828 4.6 20.3 1.0 C3 A:CLA828 4.7 20.3 1.0 CBD A:CLA808 4.9 24.3 1.0 C7 A:CLA828 5.0 20.3 1.0

Magnesium binding site 9 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:28.5 occ:1.00 MG A:CLA809 0.0 28.5 1.0 ND A:CLA809 2.0 28.5 1.0 NB A:CLA809 2.0 28.5 1.0 NC A:CLA809 2.1 28.5 1.0 NA A:CLA809 2.1 28.5 1.0 OE1 A:GLN124 2.2 30.2 1.0 C4D A:CLA809 3.0 28.5 1.0 C1C A:CLA809 3.0 28.5 1.0 C4B A:CLA809 3.0 28.5 1.0 C1B A:CLA809 3.0 28.5 1.0 C4A A:CLA809 3.0 28.5 1.0 C1A A:CLA809 3.1 28.5 1.0 CD A:GLN124 3.1 30.2 1.0 C4C A:CLA809 3.2 28.5 1.0 C1D A:CLA809 3.3 28.5 1.0 CHB A:CLA809 3.4 28.5 1.0 CHC A:CLA809 3.4 28.5 1.0 NE2 A:GLN124 3.4 30.2 1.0 CHA A:CLA809 3.5 28.5 1.0 C19 A:CLA828 3.6 20.3 1.0 CHD A:CLA809 3.7 28.5 1.0 C3D A:CLA809 4.3 28.5 1.0 C3B A:CLA809 4.3 28.5 1.0 C2B A:CLA809 4.3 28.5 1.0 C2C A:CLA809 4.4 28.5 1.0 C3A A:CLA809 4.4 28.5 1.0 C2A A:CLA809 4.4 28.5 1.0 C3C A:CLA809 4.4 28.5 1.0 C2D A:CLA809 4.5 28.5 1.0 CG A:GLN124 4.5 30.2 1.0 C17 A:CLA828 4.6 20.3 1.0 C18 A:CLA828 4.6 20.3 1.0 CBB A:CLA808 4.8 24.3 1.0 C16 A:CLA828 4.9 20.3 1.0 CB A:GLN124 4.9 30.2 1.0 CBD A:CLA809 4.9 28.5 1.0

Magnesium binding site 10 out of 81 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:29.9 occ:1.00 MG A:CLA810 0.0 29.9 1.0 ND A:CLA810 2.0 29.9 1.0 NB A:CLA810 2.0 29.9 1.0 NC A:CLA810 2.1 29.9 1.0 NA A:CLA810 2.1 29.9 1.0 NE2 A:HIS180 2.2 30.2 1.0 CE1 A:HIS180 2.7 30.2 1.0 C4D A:CLA810 3.0 29.9 1.0 C1C A:CLA810 3.0 29.9 1.0 C4A A:CLA810 3.0 29.9 1.0 C4B A:CLA810 3.0 29.9 1.0 C1B A:CLA810 3.0 29.9 1.0 C1A A:CLA810 3.1 29.9 1.0 C4C A:CLA810 3.1 29.9 1.0 C1D A:CLA810 3.3 29.9 1.0 CHB A:CLA810 3.4 29.9 1.0 CHC A:CLA810 3.4 29.9 1.0 CHA A:CLA810 3.5 29.9 1.0 CD2 A:HIS180 3.5 30.2 1.0 CHD A:CLA810 3.7 29.9 1.0 ND1 A:HIS180 4.0 30.2 1.0 C3D A:CLA810 4.3 29.9 1.0 C2C A:CLA810 4.4 29.9 1.0 C3B A:CLA810 4.4 29.9 1.0 C2B A:CLA810 4.4 29.9 1.0 C3A A:CLA810 4.4 29.9 1.0 CG A:HIS180 4.4 30.2 1.0 C2A A:CLA810 4.4 29.9 1.0 C3C A:CLA810 4.4 29.9 1.0 C2D A:CLA810 4.5 29.9 1.0 CBD A:CLA810 4.9 29.9 1.0

K.Kato, R.Nagao, Y.Ueno, M.Yokono, T.Suzuki, T.Y.Jiang, N.Dohmae, F.Akita, S.Akimoto, N.Miyazaki, J.R.Shen. Structural Insights Into An Evolutionary Turning-Point of Photosystem I From Prokaryotes to Eukaryotes Biorxiv 2022.
DOI: 10.1101/2022.01.03.474851