Magnesium in PDB 7dsa: Crystal Structure of Actin Capping Protein in Complex with V-1 (Space Group P62)

The structure of Crystal Structure of Actin Capping Protein in Complex with V-1 (Space Group P62), PDB code: 7dsa was solved by S.Takeda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.27 / 2.80
Space group	P 62
Cell size a, b, c (Å), α, β, γ (°)	160.293, 160.293, 51.999, 90, 90, 120
R / Rfree (%)	21.3 / 25.4

The binding sites of Magnesium atom in the Crystal Structure of Actin Capping Protein in Complex with V-1 (Space Group P62) (pdb code 7dsa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Actin Capping Protein in Complex with V-1 (Space Group P62), PDB code: 7dsa:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Actin Capping Protein in Complex with V-1 (Space Group P62)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Actin Capping Protein in Complex with V-1 (Space Group P62) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:50.2 occ:1.00 OXT B:ARG244 2.5 42.8 1.0 O B:HOH403 2.6 37.9 1.0 C B:ARG244 3.3 36.4 1.0 O B:ARG244 3.4 40.1 1.0 O A:HIS135 4.3 46.8 1.0 CA B:ARG244 4.8 30.6 1.0 O B:ASN241 4.9 32.5 1.0 NE2 A:GLN240 4.9 30.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Actin Capping Protein in Complex with V-1 (Space Group P62)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Actin Capping Protein in Complex with V-1 (Space Group P62) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg201 b:30.7 occ:1.00 O C:HOH326 2.1 29.9 1.0 O C:HOH318 2.2 33.8 1.0 OD1 C:ASP109 2.6 29.0 1.0 CG C:ASP109 3.6 32.8 1.0 OD2 C:ASP109 4.0 30.0 1.0 O C:THR108 4.1 30.5 1.0 O C:GLU106 4.3 33.0 1.0 C C:THR108 4.5 31.2 1.0 N C:ASP109 4.8 29.5 1.0 CB C:ASP109 4.8 31.3 1.0 CA C:ASP109 4.8 26.3 1.0

S.Takeda, R.Koike, I.Fujiwara, A.Narita, M.Miyata, M.Ota, Y.Maeda. Structural Insights Into the Regulation of Actin Capping Protein By Twinfilin C-Terminal Tail J.Mol.Biol. 2021.
ISSN: ESSN 1089-8638
DOI: 10.1016/J.JMB.2021.166891