Magnesium in PDB 7e2b: Gdpd Mutant Complex From Pyrococcus Furiosus Dsm 3638

The structure of Gdpd Mutant Complex From Pyrococcus Furiosus Dsm 3638, PDB code: 7e2b was solved by Y.H.Wang, J.Wang, F.H.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.83 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.92, 70.12, 90.5, 90, 90, 90
R / Rfree (%)	18.1 / 22

The binding sites of Magnesium atom in the Gdpd Mutant Complex From Pyrococcus Furiosus Dsm 3638 (pdb code 7e2b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Gdpd Mutant Complex From Pyrococcus Furiosus Dsm 3638, PDB code: 7e2b:

Magnesium binding site 1 out of 1 in the Gdpd Mutant Complex From Pyrococcus Furiosus Dsm 3638


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gdpd Mutant Complex From Pyrococcus Furiosus Dsm 3638 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:34.5 occ:1.00 H61 A:CHT302 1.5 26.1 1.0 OE1 A:GLU111 2.0 29.4 1.0 OD1 A:ASP46 2.1 28.3 1.0 OE2 A:GLU44 2.1 32.7 1.0 H62 A:CHT302 2.1 26.1 1.0 O A:HOH457 2.1 37.7 1.0 O A:HOH415 2.2 33.6 1.0 C6 A:CHT302 2.2 21.7 1.0 H63 A:CHT302 2.8 26.1 1.0 HC42 A:CHT302 2.9 43.1 1.0 H72 A:CHT302 3.0 26.0 1.0 CG A:ASP46 3.1 32.8 1.0 CD A:GLU44 3.1 34.5 1.0 CD A:GLU111 3.1 33.1 1.0 N1 A:CHT302 3.2 38.8 1.0 OE1 A:GLU44 3.4 33.1 1.0 OD2 A:ASP46 3.4 36.4 1.0 C7 A:CHT302 3.5 21.7 1.0 HB3 A:GLU111 3.5 29.8 1.0 C4 A:CHT302 3.6 35.9 1.0 H71 A:CHT302 3.7 26.0 1.0 HO6 A:CHT302 3.7 59.1 1.0 HB2 A:GLU111 3.8 29.8 1.0 HE2 A:LYS113 3.8 52.7 1.0 C5 A:CHT302 3.8 31.9 1.0 OE2 A:GLU111 3.9 30.6 1.0 HZ1 A:LYS113 4.0 54.2 1.0 CB A:GLU111 4.0 24.8 1.0 O6 A:CHT302 4.0 49.2 1.0 HZ3 A:LYS113 4.0 54.2 1.0 CG A:GLU111 4.1 29.6 1.0 NE2 A:HIS17 4.1 34.3 1.0 HE A:ARG18 4.1 56.3 1.0 HC52 A:CHT302 4.2 38.3 1.0 O A:HOH401 4.2 41.7 1.0 C8 A:CHT302 4.3 43.6 1.0 H81 A:CHT302 4.3 52.4 1.0 NZ A:LYS113 4.3 45.2 1.0 HD2 A:HIS17 4.3 40.6 1.0 H73 A:CHT302 4.4 26.0 1.0 CB A:ASP46 4.4 27.6 1.0 CG A:GLU44 4.5 28.5 1.0 HC41 A:CHT302 4.5 43.1 1.0 CE A:LYS113 4.5 43.9 1.0 ND1 A:HIS59 4.5 48.1 1.0 HG3 A:ARG18 4.6 46.6 1.0 HG3 A:GLU44 4.6 34.2 1.0 HA A:ASP46 4.6 32.7 1.0 HB3 A:ASP46 4.6 33.1 1.0 CD2 A:HIS17 4.6 33.9 1.0 H83 A:CHT302 4.6 52.4 1.0 HC51 A:CHT302 4.7 38.3 1.0 HG2 A:GLU111 4.7 35.6 1.0 HH21 A:ARG18 4.7 68.5 1.0 HE1 A:HIS59 4.7 63.7 1.0 HG2 A:GLU44 4.7 34.2 1.0 HG3 A:GLU111 4.7 35.6 1.0 HG2 A:ARG18 4.7 46.6 1.0 O A:ILE45 4.7 29.4 1.0 NE A:ARG18 4.9 46.9 1.0 CA A:ASP46 4.9 27.2 1.0 C A:ILE45 4.9 27.4 1.0 N A:ASP46 5.0 25.6 1.0

Y.H.Wang, J.Wang, F.H.Wang. Observation of the Gpc Production During Hydrolysis of Lpc By Gdpd D60A From Pyrococcus Furiosus Dsm 3638 To Be Published.