Magnesium in PDB 7e2w: Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Isocitrate and Magnesium(II)

Enzymatic activity of Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Isocitrate and Magnesium(II)

All present enzymatic activity of Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Isocitrate and Magnesium(II):
1.1.1.41;

Protein crystallography data

The structure of Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Isocitrate and Magnesium(II), PDB code: 7e2w was solved by G.P.Zhu, W.G.Tang, P.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.95 / 1.80
*Space group*	P 1
*Cell size a, b, c (Å), α, β, γ (°)*	66.25, 78.511, 111.056, 89.15, 103.59, 111.89
*R / R_free (%)*	20.8 / 23.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Isocitrate and Magnesium(II) (pdb code 7e2w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Isocitrate and Magnesium(II), PDB code: 7e2w:

Magnesium binding site 1 out of 1 in 7e2w

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Magnesium Binding Sites List in 7e2w

Magnesium binding site 1 out of 1 in the Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Isocitrate and Magnesium(II)

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Isocitrate and Magnesium(II) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg501 b:26.6 occ:1.00	OD1	A:ASP302	2.0	22.4	1.0
	OD2	B:ASP278	2.1	25.8	1.0
	O7	A:ICT500	2.1	26.6	1.0
	O	B:HOH636	2.1	27.5	1.0
	O2	A:ICT500	2.1	27.4	1.0
	O	A:HOH640	2.2	24.2	1.0
	C1	A:ICT500	2.9	28.1	1.0
	C2	A:ICT500	2.9	27.6	1.0
	CG	A:ASP302	3.1	22.5	1.0
	CG	B:ASP278	3.2	27.6	1.0
	OD2	A:ASP302	3.7	27.8	1.0
	CB	B:ASP278	3.8	24.3	1.0
	OD1	A:ASP306	3.9	27.1	1.0
	O	A:ASP302	4.1	19.8	1.0
	NZ	B:LYS234	4.1	25.6	1.0
	O1	A:ICT500	4.1	27.3	1.0
	C3	A:ICT500	4.1	26.8	1.0
	C6	A:ICT500	4.1	27.3	1.0
	OD1	B:ASP278	4.2	26.4	1.0
	CG	A:ASP306	4.3	26.9	1.0
	CB	A:ASP302	4.3	20.5	1.0
	NH2	A:ARG132	4.4	22.4	1.0
	OD2	A:ASP306	4.4	31.6	1.0
	O5	A:ICT500	4.4	26.3	1.0
	O6	A:ICT500	4.4	23.9	1.0
	CA	A:ASP302	4.4	19.5	1.0
	O	A:HOH621	4.5	35.5	1.0
	C	A:ASP302	4.5	21.6	1.0
	NH1	A:ARG152	4.6	19.9	1.0
	O	B:HOH547	4.8	27.2	1.0
	C4	A:ICT500	4.9	30.9	1.0

Reference:

G.P.Zhu, W.G.Tang, P.Wang. Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Isocitrate and MG2+ To Be Published.

Page generated: Wed Oct 2 20:30:40 2024

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