Magnesium in PDB 7ebi: Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.

The structure of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose., PDB code: 7ebi was solved by Y.Kitaoku, P.Ubonbal, L.T.Tran, R.C.Robinson, W.Suginta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.49 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.877, 57.107, 82.134, 90, 99.54, 90
R / Rfree (%)	17.4 / 19.2

The structure of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Magnesium atom in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. (pdb code 7ebi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose., PDB code: 7ebi:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg614 b:13.9 occ:1.00 O A:HOH829 2.1 25.1 1.0 O A:HOH868 2.2 24.0 1.0 O1 A:EDO613 2.3 27.0 1.0 O A:ALA188 2.3 14.6 1.0 O A:LEU191 2.4 14.5 1.0 O2 A:EDO613 2.5 26.2 1.0 O A:HOH723 2.6 25.4 1.0 C1 A:EDO613 3.2 29.1 1.0 C2 A:EDO613 3.3 30.8 1.0 C A:ALA188 3.5 14.3 1.0 C A:LEU191 3.6 11.8 1.0 N A:LEU191 4.1 13.0 1.0 CA A:ALA189 4.2 13.1 1.0 CA A:LEU191 4.3 13.3 1.0 O A:HOH832 4.3 25.8 1.0 N A:ALA189 4.3 15.2 1.0 O A:HOH727 4.3 32.6 1.0 C A:ALA189 4.4 13.7 1.0 CA A:ALA188 4.4 13.1 1.0 CB A:LEU191 4.4 12.2 1.0 OD1 A:ASP192 4.6 28.0 1.0 O A:ALA189 4.6 19.2 1.0 CB A:ALA188 4.7 19.1 1.0 N A:ASP192 4.7 12.2 1.0 OE2 A:GLU181 4.7 22.6 1.0 N A:ASN190 4.8 12.6 1.0 CA A:ASP192 4.9 11.3 1.0

Magnesium binding site 2 out of 4 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg615 b:14.9 occ:1.00 OE1 A:GLU465 2.2 23.3 1.0 O1 A:EDO603 2.4 22.4 1.0 O A:HOH745 2.6 21.0 1.0 O2 A:EDO603 2.6 25.1 1.0 C1 A:EDO603 3.3 21.3 1.0 C2 A:EDO603 3.4 20.1 1.0 CD A:GLU465 3.5 18.4 1.0 CB A:GLU465 4.1 14.9 1.0 OE1 A:GLU462 4.2 25.3 1.0 OE2 A:GLU462 4.3 25.6 1.0 OE2 A:GLU465 4.3 20.4 1.0 CG A:GLU465 4.4 15.7 1.0 O2 A:EDO606 4.5 24.0 1.0 CD A:GLU462 4.6 24.1 1.0 O A:HOH791 4.9 23.1 1.0

Magnesium binding site 3 out of 4 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg616 b:22.9 occ:1.00 O A:HOH929 2.1 37.8 1.0 O A:HOH906 2.5 40.3 1.0 O1 A:EDO611 2.6 34.1 1.0 O2 A:EDO611 2.7 35.0 1.0 O A:HOH990 2.8 37.3 1.0 C2 A:EDO611 3.5 34.5 1.0 C1 A:EDO611 3.6 27.1 1.0 OE2 A:GLU96 4.5 43.3 1.0 OE1 A:GLU96 4.8 35.6 1.0 CL A:CL620 4.8 26.4 1.0

Magnesium binding site 4 out of 4 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co- Crystalized with Chitotetraose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg617 b:24.2 occ:1.00 O A:HOH786 2.0 24.6 1.0 O A:HOH970 2.0 23.5 1.0 O A:HOH1000 2.1 27.0 1.0 O A:HOH725 2.2 20.9 1.0 O A:HOH997 2.2 28.4 1.0 O A:HOH729 2.2 19.5 1.0 O A:ALA81 4.0 19.5 1.0 OD1 A:ASP86 4.2 17.8 1.0 OD2 A:ASP86 4.3 17.4 1.0 OG1 A:THR83 4.4 24.4 1.0 ND1 A:HIS144 4.4 24.1 1.0 O A:HOH994 4.6 29.2 1.0 CB A:ASP85 4.6 24.7 1.0 OD2 A:ASP85 4.6 41.3 1.0 CG A:ASP86 4.7 16.2 1.0 CB A:HIS144 4.8 23.6 1.0 O A:HOH840 4.9 33.5 1.0 CG A:HIS144 5.0 21.8 1.0

Y.Kitaoku, P.Ubonbal, L.T.Tran, R.C.Robinson, W.Suginta. Structural Insight Into Chitin-Specific Solute-Binding Protein From Vibrio Harveyi To Be Published.