Atomistry » Magnesium » PDB 7e1t-7efm » 7ed2
Atomistry »
  Magnesium »
    PDB 7e1t-7efm »
      7ed2 »

Magnesium in PDB 7ed2: Transferase From Mycobacterium Tuberculosis

Protein crystallography data

The structure of Transferase From Mycobacterium Tuberculosis, PDB code: 7ed2 was solved by D.-G.Kim, B.-J.Lee, S.J.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.37 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.41, 78.603, 81.869, 90, 90, 90
R / Rfree (%) 18.2 / 21.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Transferase From Mycobacterium Tuberculosis (pdb code 7ed2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Transferase From Mycobacterium Tuberculosis, PDB code: 7ed2:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7ed2

Go back to Magnesium Binding Sites List in 7ed2
Magnesium binding site 1 out of 4 in the Transferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Transferase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:23.4
occ:1.00
 O5P A:A3P301 1.9 23.6 1.0
OD1 A:ASP109 1.9 23.9 1.0
O A:HOH408 2.0 23.8 1.0
O A:HOH417 2.0 26.7 1.0
O A:HOH410 2.1 28.7 1.0
OE1 A:GLU151 2.2 31.5 1.0
CG A:ASP109 3.0 23.5 1.0
P2 A:A3P301 3.1 22.1 1.0
CD A:GLU151 3.3 40.5 1.0
OD2 A:ASP109 3.4 26.3 1.0
O4P A:A3P301 3.4 24.6 1.0
O6P A:A3P301 3.9 23.4 1.0
OG1 A:THR87 3.9 19.7 1.0
OE2 A:GLU111 4.0 34.8 1.0
OE2 A:GLU151 4.1 50.0 1.0
NZ A:LYS155 4.1 22.3 1.0
CG A:GLU151 4.1 36.7 1.0
O A:ALA110 4.2 23.8 1.0
CB A:ASP109 4.3 23.0 1.0
O5' A:A3P301 4.4 23.5 1.0
O A:HOH430 4.4 21.2 1.0
CB A:GLU151 4.5 29.2 1.0
CE A:LYS155 4.6 23.5 1.0
N A:ALA110 4.7 21.4 1.0
CA A:ASP109 4.7 21.3 1.0
CG A:GLU111 4.9 31.3 1.0
CD A:GLU111 4.9 38.3 1.0

Magnesium binding site 2 out of 4 in 7ed2

Go back to Magnesium Binding Sites List in 7ed2
Magnesium binding site 2 out of 4 in the Transferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Transferase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:23.0
occ:1.00
 O6P A:A3P301 2.0 23.4 1.0
O A:HIS88 2.0 23.6 1.0
O A:HOH430 2.0 21.2 1.0
O A:HOH451 2.1 21.7 1.0
O A:HOH425 2.1 24.7 1.0
ND1 A:HIS88 2.3 19.5 1.0
C A:HIS88 3.1 20.7 1.0
CE1 A:HIS88 3.1 18.9 1.0
P2 A:A3P301 3.3 22.1 1.0
CG A:HIS88 3.4 17.9 1.0
O4P A:A3P301 3.5 24.6 1.0
N A:HIS88 3.6 21.5 1.0
CA A:HIS88 3.6 20.3 1.0
CB A:HIS88 3.8 20.0 1.0
O A:HOH404 4.1 45.5 1.0
N A:CYS89 4.2 20.2 1.0
OE1 A:GLU46 4.2 26.1 1.0
O A:HOH417 4.3 26.7 1.0
O5P A:A3P301 4.3 23.6 1.0
O5' A:A3P301 4.3 23.5 1.0
NE2 A:HIS88 4.3 20.1 1.0
O A:HOH459 4.4 40.0 1.0
C5' A:A3P301 4.4 23.1 1.0
O A:HOH410 4.4 28.7 1.0
CD2 A:HIS88 4.5 22.1 1.0
OE2 A:GLU46 4.6 27.8 1.0
CD A:GLU46 4.6 30.5 1.0
CA A:CYS89 4.6 22.4 1.0
C A:THR87 4.9 18.9 1.0
O A:HOH423 4.9 31.8 1.0

Magnesium binding site 3 out of 4 in 7ed2

Go back to Magnesium Binding Sites List in 7ed2
Magnesium binding site 3 out of 4 in the Transferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Transferase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg302

b:22.5
occ:1.00
 O B:HOH408 1.9 22.7 1.0
O6P B:A3P301 2.0 21.1 1.0
OD1 B:ASP109 2.0 22.8 1.0
O B:HOH423 2.0 21.9 1.0
O B:HOH429 2.1 25.2 1.0
OE1 B:GLU151 2.2 32.6 1.0
CG B:ASP109 3.0 23.0 1.0
P2 B:A3P301 3.1 20.2 1.0
CD B:GLU151 3.3 39.2 1.0
OD2 B:ASP109 3.4 23.3 1.0
O5P B:A3P301 3.5 24.4 1.0
O4P B:A3P301 3.9 19.7 1.0
OE2 B:GLU111 3.9 34.0 1.0
OG1 B:THR87 4.0 19.6 1.0
CG B:GLU151 4.0 32.4 1.0
OE2 B:GLU151 4.1 38.6 1.0
NZ B:LYS155 4.2 19.4 1.0
O B:ALA110 4.2 21.7 1.0
O B:HOH445 4.2 21.1 1.0
CB B:ASP109 4.3 20.7 1.0
O5' B:A3P301 4.3 20.6 1.0
CB B:GLU151 4.4 26.2 1.0
CE B:LYS155 4.7 18.6 1.0
N B:ALA110 4.8 18.4 1.0
CA B:ASP109 4.8 18.1 1.0
CD B:GLU111 4.9 33.4 1.0

Magnesium binding site 4 out of 4 in 7ed2

Go back to Magnesium Binding Sites List in 7ed2
Magnesium binding site 4 out of 4 in the Transferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Transferase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg303

b:20.8
occ:1.00
 O4P B:A3P301 2.0 19.7 1.0
O B:HIS88 2.0 19.6 1.0
O B:HOH452 2.0 24.0 1.0
O B:HOH428 2.2 22.3 1.0
ND1 B:HIS88 2.2 20.6 1.0
O B:HOH445 2.2 21.1 1.0
CE1 B:HIS88 3.0 21.0 1.0
C B:HIS88 3.1 18.8 1.0
P2 B:A3P301 3.3 20.2 1.0
CG B:HIS88 3.3 19.3 1.0
O5P B:A3P301 3.5 24.4 1.0
N B:HIS88 3.6 18.7 1.0
CA B:HIS88 3.6 17.9 1.0
CB B:HIS88 3.8 19.8 1.0
NE2 B:HIS88 4.2 19.8 1.0
N B:CYS89 4.2 19.0 1.0
OE2 B:GLU46 4.3 27.3 1.0
O B:HOH401 4.3 40.3 1.0
O5' B:A3P301 4.3 20.6 1.0
O6P B:A3P301 4.3 21.1 1.0
O B:HOH423 4.3 21.9 1.0
CD2 B:HIS88 4.3 21.1 1.0
C5' B:A3P301 4.4 20.1 1.0
O B:HOH429 4.4 25.2 1.0
OE1 B:GLU46 4.5 25.4 1.0
CD B:GLU46 4.6 25.6 1.0
O B:HOH476 4.6 35.6 1.0
CA B:CYS89 4.7 20.7 1.0
C B:THR87 4.8 18.2 1.0

Reference:

D.-G.Kim, B.-J.Lee, S.J.Lee. Transferase From Mycobacterium Tuberculosis To Be Published.
Page generated: Wed Oct 2 20:34:57 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy