Magnesium in PDB 7ed2: Transferase From Mycobacterium Tuberculosis

The structure of Transferase From Mycobacterium Tuberculosis, PDB code: 7ed2 was solved by D.-G.Kim, B.-J.Lee, S.J.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.37 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	67.41, 78.603, 81.869, 90, 90, 90
R / Rfree (%)	18.2 / 21.9

The binding sites of Magnesium atom in the Transferase From Mycobacterium Tuberculosis (pdb code 7ed2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Transferase From Mycobacterium Tuberculosis, PDB code: 7ed2:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Transferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Transferase From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:23.4 occ:1.00 O5P A:A3P301 1.9 23.6 1.0 OD1 A:ASP109 1.9 23.9 1.0 O A:HOH408 2.0 23.8 1.0 O A:HOH417 2.0 26.7 1.0 O A:HOH410 2.1 28.7 1.0 OE1 A:GLU151 2.2 31.5 1.0 CG A:ASP109 3.0 23.5 1.0 P2 A:A3P301 3.1 22.1 1.0 CD A:GLU151 3.3 40.5 1.0 OD2 A:ASP109 3.4 26.3 1.0 O4P A:A3P301 3.4 24.6 1.0 O6P A:A3P301 3.9 23.4 1.0 OG1 A:THR87 3.9 19.7 1.0 OE2 A:GLU111 4.0 34.8 1.0 OE2 A:GLU151 4.1 50.0 1.0 NZ A:LYS155 4.1 22.3 1.0 CG A:GLU151 4.1 36.7 1.0 O A:ALA110 4.2 23.8 1.0 CB A:ASP109 4.3 23.0 1.0 O5' A:A3P301 4.4 23.5 1.0 O A:HOH430 4.4 21.2 1.0 CB A:GLU151 4.5 29.2 1.0 CE A:LYS155 4.6 23.5 1.0 N A:ALA110 4.7 21.4 1.0 CA A:ASP109 4.7 21.3 1.0 CG A:GLU111 4.9 31.3 1.0 CD A:GLU111 4.9 38.3 1.0

Magnesium binding site 2 out of 4 in the Transferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Transferase From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:23.0 occ:1.00 O6P A:A3P301 2.0 23.4 1.0 O A:HIS88 2.0 23.6 1.0 O A:HOH430 2.0 21.2 1.0 O A:HOH451 2.1 21.7 1.0 O A:HOH425 2.1 24.7 1.0 ND1 A:HIS88 2.3 19.5 1.0 C A:HIS88 3.1 20.7 1.0 CE1 A:HIS88 3.1 18.9 1.0 P2 A:A3P301 3.3 22.1 1.0 CG A:HIS88 3.4 17.9 1.0 O4P A:A3P301 3.5 24.6 1.0 N A:HIS88 3.6 21.5 1.0 CA A:HIS88 3.6 20.3 1.0 CB A:HIS88 3.8 20.0 1.0 O A:HOH404 4.1 45.5 1.0 N A:CYS89 4.2 20.2 1.0 OE1 A:GLU46 4.2 26.1 1.0 O A:HOH417 4.3 26.7 1.0 O5P A:A3P301 4.3 23.6 1.0 O5' A:A3P301 4.3 23.5 1.0 NE2 A:HIS88 4.3 20.1 1.0 O A:HOH459 4.4 40.0 1.0 C5' A:A3P301 4.4 23.1 1.0 O A:HOH410 4.4 28.7 1.0 CD2 A:HIS88 4.5 22.1 1.0 OE2 A:GLU46 4.6 27.8 1.0 CD A:GLU46 4.6 30.5 1.0 CA A:CYS89 4.6 22.4 1.0 C A:THR87 4.9 18.9 1.0 O A:HOH423 4.9 31.8 1.0

Magnesium binding site 3 out of 4 in the Transferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Transferase From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:22.5 occ:1.00 O B:HOH408 1.9 22.7 1.0 O6P B:A3P301 2.0 21.1 1.0 OD1 B:ASP109 2.0 22.8 1.0 O B:HOH423 2.0 21.9 1.0 O B:HOH429 2.1 25.2 1.0 OE1 B:GLU151 2.2 32.6 1.0 CG B:ASP109 3.0 23.0 1.0 P2 B:A3P301 3.1 20.2 1.0 CD B:GLU151 3.3 39.2 1.0 OD2 B:ASP109 3.4 23.3 1.0 O5P B:A3P301 3.5 24.4 1.0 O4P B:A3P301 3.9 19.7 1.0 OE2 B:GLU111 3.9 34.0 1.0 OG1 B:THR87 4.0 19.6 1.0 CG B:GLU151 4.0 32.4 1.0 OE2 B:GLU151 4.1 38.6 1.0 NZ B:LYS155 4.2 19.4 1.0 O B:ALA110 4.2 21.7 1.0 O B:HOH445 4.2 21.1 1.0 CB B:ASP109 4.3 20.7 1.0 O5' B:A3P301 4.3 20.6 1.0 CB B:GLU151 4.4 26.2 1.0 CE B:LYS155 4.7 18.6 1.0 N B:ALA110 4.8 18.4 1.0 CA B:ASP109 4.8 18.1 1.0 CD B:GLU111 4.9 33.4 1.0

Magnesium binding site 4 out of 4 in the Transferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Transferase From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg303 b:20.8 occ:1.00 O4P B:A3P301 2.0 19.7 1.0 O B:HIS88 2.0 19.6 1.0 O B:HOH452 2.0 24.0 1.0 O B:HOH428 2.2 22.3 1.0 ND1 B:HIS88 2.2 20.6 1.0 O B:HOH445 2.2 21.1 1.0 CE1 B:HIS88 3.0 21.0 1.0 C B:HIS88 3.1 18.8 1.0 P2 B:A3P301 3.3 20.2 1.0 CG B:HIS88 3.3 19.3 1.0 O5P B:A3P301 3.5 24.4 1.0 N B:HIS88 3.6 18.7 1.0 CA B:HIS88 3.6 17.9 1.0 CB B:HIS88 3.8 19.8 1.0 NE2 B:HIS88 4.2 19.8 1.0 N B:CYS89 4.2 19.0 1.0 OE2 B:GLU46 4.3 27.3 1.0 O B:HOH401 4.3 40.3 1.0 O5' B:A3P301 4.3 20.6 1.0 O6P B:A3P301 4.3 21.1 1.0 O B:HOH423 4.3 21.9 1.0 CD2 B:HIS88 4.3 21.1 1.0 C5' B:A3P301 4.4 20.1 1.0 O B:HOH429 4.4 25.2 1.0 OE1 B:GLU46 4.5 25.4 1.0 CD B:GLU46 4.6 25.6 1.0 O B:HOH476 4.6 35.6 1.0 CA B:CYS89 4.7 20.7 1.0 C B:THR87 4.8 18.2 1.0

D.-G.Kim, B.-J.Lee, S.J.Lee. Transferase From Mycobacterium Tuberculosis To Be Published.