Magnesium in PDB 7efm: Crystal Structure of the Gastric Proton Pump K791S/E820D/Y340N in (Byk)E2BEF State

The structure of Crystal Structure of the Gastric Proton Pump K791S/E820D/Y340N in (Byk)E2BEF State, PDB code: 7efm was solved by K.Abe, K.Yamamoto, K.Irie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.15 / 3.20
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	104.69, 104.69, 368.02, 90, 90, 120
R / Rfree (%)	22.8 / 29.3

The structure of Crystal Structure of the Gastric Proton Pump K791S/E820D/Y340N in (Byk)E2BEF State also contains other interesting chemical elements:

Rubidium	(Rb)	3 atoms
Fluorine	(F)	3 atoms

The binding sites of Magnesium atom in the Crystal Structure of the Gastric Proton Pump K791S/E820D/Y340N in (Byk)E2BEF State (pdb code 7efm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Gastric Proton Pump K791S/E820D/Y340N in (Byk)E2BEF State, PDB code: 7efm:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Gastric Proton Pump K791S/E820D/Y340N in (Byk)E2BEF State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Gastric Proton Pump K791S/E820D/Y340N in (Byk)E2BEF State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:53.5 occ:1.00 F2 A:BFD385 1.8 50.5 1.0 OD2 A:BFD385 2.2 52.3 1.0 OD1 A:ASP726 2.2 61.0 1.0 O A:THR387 2.4 62.1 1.0 CG A:ASP726 3.0 65.6 1.0 OD2 A:ASP726 3.1 71.5 1.0 BE A:BFD385 3.1 54.0 1.0 CG A:BFD385 3.3 49.8 1.0 O A:ASP726 3.3 76.9 1.0 C A:THR387 3.4 64.7 1.0 O A:SER225 3.6 62.1 1.0 OD1 A:BFD385 3.7 52.1 1.0 OD1 A:ASN729 3.9 72.5 1.0 CB A:THR387 4.1 66.0 1.0 F3 A:BFD385 4.1 46.7 1.0 CA A:THR387 4.2 65.5 1.0 OD2 A:ASP730 4.2 74.2 1.0 C A:ASP726 4.3 68.7 1.0 ND2 A:ASN729 4.3 58.6 1.0 N A:GLY388 4.4 65.1 1.0 CB A:ASP726 4.4 56.6 1.0 F1 A:BFD385 4.4 69.0 1.0 N A:THR387 4.5 67.1 1.0 CG2 A:THR387 4.5 67.5 1.0 CB A:BFD385 4.6 42.0 1.0 CG A:ASN729 4.6 61.7 1.0 CA A:GLY388 4.6 65.0 1.0 C A:SER225 4.8 63.5 1.0 CA A:ASP726 4.8 52.0 1.0 N A:ASP726 4.9 47.5 1.0 CG2 A:THR389 5.0 47.9 1.0 N A:THR389 5.0 58.6 1.0

K.Abe, K.Yamamoto, K.Irie. Crystal Structure of the Gastric Proton Pump Mutants To Be Published.