Magnesium in PDB 7ehl: Cryo-Em Structure of Human ABCB8 Transporter in Nucleotide Binding State

The binding sites of Magnesium atom in the Cryo-Em Structure of Human ABCB8 Transporter in Nucleotide Binding State (pdb code 7ehl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Human ABCB8 Transporter in Nucleotide Binding State, PDB code: 7ehl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Human ABCB8 Transporter in Nucleotide Binding State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human ABCB8 Transporter in Nucleotide Binding State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg904 b:139.3 occ:1.00 CG2 A:THR514 2.0 127.2 1.0 O2B A:ANP902 2.1 149.3 1.0 OG1 A:THR514 2.1 127.2 1.0 N3B A:ANP902 2.1 149.3 1.0 CB A:THR514 2.5 127.2 1.0 PB A:ANP902 2.5 149.3 1.0 O2G A:ANP902 2.8 149.3 1.0 PG A:ANP902 3.0 149.3 1.0 O1A A:ANP902 3.2 149.3 1.0 O3A A:ANP902 3.4 149.3 1.0 N A:THR514 3.4 127.2 1.0 O2A A:ANP902 3.5 149.3 1.0 CA A:THR514 3.5 127.2 1.0 PA A:ANP902 3.5 149.3 1.0 O1B A:ANP902 3.8 149.3 1.0 O1G A:ANP902 4.0 149.3 1.0 NZ A:LYS513 4.1 134.2 1.0 O3G A:ANP902 4.1 149.3 1.0 CG A:LYS513 4.4 134.2 1.0 C A:THR514 4.6 127.2 1.0 C A:LYS513 4.7 134.2 1.0 N A:LYS513 4.8 134.2 1.0 N A:THR515 4.8 135.1 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Human ABCB8 Transporter in Nucleotide Binding State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human ABCB8 Transporter in Nucleotide Binding State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1004 b:140.7 occ:1.00 CG2 B:THR514 2.0 127.7 1.0 O2B B:ANP1003 2.1 149.5 1.0 OG1 B:THR514 2.1 127.7 1.0 N3B B:ANP1003 2.1 149.5 1.0 CB B:THR514 2.5 127.7 1.0 PB B:ANP1003 2.5 149.5 1.0 O2G B:ANP1003 2.8 149.5 1.0 PG B:ANP1003 3.0 149.5 1.0 O1A B:ANP1003 3.3 149.5 1.0 O3A B:ANP1003 3.4 149.5 1.0 N B:THR514 3.4 127.7 1.0 O2A B:ANP1003 3.5 149.5 1.0 CA B:THR514 3.5 127.7 1.0 PA B:ANP1003 3.5 149.5 1.0 O1B B:ANP1003 3.8 149.5 1.0 O1G B:ANP1003 4.0 149.5 1.0 NZ B:LYS513 4.1 133.8 1.0 O3G B:ANP1003 4.1 149.5 1.0 CG B:LYS513 4.4 133.8 1.0 C B:THR514 4.6 127.7 1.0 C B:LYS513 4.7 133.8 1.0 N B:THR515 4.8 136.7 1.0 N B:LYS513 4.8 133.8 1.0

S.Li, Y.Ren, X.Lu, Y.Shen, X.Yang. Cryo-Em Structure of Human ABCB8 Transporter in Nucleotide Binding State. Biochem.Biophys.Res.Commun. V. 557 187 2021.
ISSN: ESSN 1090-2104
PubMed: 33872987
DOI: 10.1016/J.BBRC.2021.04.007