Magnesium in PDB 7el4: The Crystal Structure of P53P Peptide Fragment in Complex with the N- Terminal Domain of Mdmx

Protein crystallography data

The structure of The Crystal Structure of P53P Peptide Fragment in Complex with the N- Terminal Domain of Mdmx, PDB code: 7el4 was solved by X.Y.Cheng, B.L.Zhang, Z.C.Li, Z.K.Kuang, Z.D.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.70 / 2.11
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 65.097, 65.097, 94.977, 90, 90, 90
R / Rfree (%) 22.4 / 22.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of P53P Peptide Fragment in Complex with the N- Terminal Domain of Mdmx (pdb code 7el4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of P53P Peptide Fragment in Complex with the N- Terminal Domain of Mdmx, PDB code: 7el4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7el4

Go back to Magnesium Binding Sites List in 7el4
Magnesium binding site 1 out of 2 in the The Crystal Structure of P53P Peptide Fragment in Complex with the N- Terminal Domain of Mdmx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of P53P Peptide Fragment in Complex with the N- Terminal Domain of Mdmx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:31.5
occ:1.00
HG2 A:LYS23 2.8 55.4 1.0
O A:HOH306 3.1 34.2 1.0
ND1 A:HIS73 3.1 36.8 1.0
O A:HOH333 3.1 37.7 1.0
NE2 A:GLN19 3.3 33.5 1.0
HD1 A:TRP22 3.3 42.7 1.0
HG3 A:GLN19 3.4 39.5 1.0
HA A:HIS73 3.5 36.3 1.0
HG3 A:LYS23 3.5 55.4 1.0
HD3 A:LYS23 3.6 52.0 1.0
CG A:LYS23 3.6 55.4 1.0
HG2 A:GLN19 3.8 39.5 1.0
HE1 A:HIS73 3.9 35.5 1.0
CE1 A:HIS73 3.9 35.5 1.0
HAF2 A:O4B200 3.9 51.1 1.0
CG A:GLN19 3.9 39.5 1.0
CD A:LYS23 4.1 52.0 1.0
CD A:GLN19 4.1 39.3 1.0
HB2 A:HIS73 4.2 34.2 1.0
CD1 A:TRP22 4.2 42.7 1.0
CG A:HIS73 4.2 35.2 1.0
HA A:LYS23 4.3 48.7 1.0
CA A:HIS73 4.4 36.3 1.0
CB A:HIS73 4.5 34.2 1.0
HAF1 A:O4B200 4.6 51.1 1.0
HD2 A:LYS23 4.6 52.0 1.0
CAF A:O4B200 4.7 51.1 1.0
HE1 A:TRP22 4.7 41.1 1.0
O A:HIS73 4.8 35.7 1.0
CB A:LYS23 4.8 48.8 1.0
NE1 A:TRP22 4.9 41.1 1.0
O A:HOH316 4.9 34.6 1.0
CA A:LYS23 4.9 48.7 1.0
HAE2 A:O4B200 5.0 52.0 1.0
HB3 A:TRP22 5.0 42.0 1.0

Magnesium binding site 2 out of 2 in 7el4

Go back to Magnesium Binding Sites List in 7el4
Magnesium binding site 2 out of 2 in the The Crystal Structure of P53P Peptide Fragment in Complex with the N- Terminal Domain of Mdmx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of P53P Peptide Fragment in Complex with the N- Terminal Domain of Mdmx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg203

b:50.3
occ:1.00
H A:GLU64 2.8 41.3 1.0
H A:MET65 3.2 42.9 1.0
HA3 A:GLY63 3.3 43.7 1.0
HB2 A:MET65 3.6 52.5 1.0
HB3 A:GLU64 3.6 48.9 1.0
N A:GLU64 3.6 41.3 1.0
HA2 A:GLY63 3.8 43.7 1.0
CA A:GLY63 3.9 43.7 1.0
N A:MET65 4.0 42.9 1.0
HB3 A:MET65 4.1 52.5 1.0
CB A:MET65 4.3 52.5 1.0
C A:GLY63 4.3 42.3 1.0
CB A:GLU64 4.4 48.9 1.0
O A:HOH317 4.4 41.1 1.0
CA A:GLU64 4.5 44.0 1.0
HB2 A:GLU64 4.6 48.9 1.0
C A:GLU64 4.7 41.6 1.0
CA A:MET65 4.8 46.5 1.0

Reference:

X.Y.Cheng, B.L.Zhang, Z.C.Li, Z.K.Kuang, Z.D.Su. The Crystal Structure of the N-Terminal Domain of Mdmx in Complex with P53P Peptide Fragment To Be Published.
Page generated: Sun Jul 11 17:36:25 2021

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