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Magnesium in PDB 7ens: Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Indolmycin and Atp

Enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Indolmycin and Atp

All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Indolmycin and Atp:
6.1.1.2;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Indolmycin and Atp, PDB code: 7ens was solved by M.Xu, S.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.78 / 2.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.752, 61.752, 334.653, 90, 90, 120
R / Rfree (%) 22.5 / 25.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Indolmycin and Atp (pdb code 7ens). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Indolmycin and Atp, PDB code: 7ens:

Magnesium binding site 1 out of 1 in 7ens

Go back to Magnesium Binding Sites List in 7ens
Magnesium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Indolmycin and Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Indolmycin and Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:35.8
occ:1.00
 O A:HOH559 2.2 60.5 1.0
O A:HOH519 2.2 52.4 1.0
O A:HOH513 2.2 58.0 1.0
O2A A:ATP401 2.2 45.5 1.0
O2G A:ATP401 2.3 51.4 1.0
O2B A:ATP401 2.3 51.9 1.0
O06 A:5BX403 3.2 45.8 1.0
PB A:ATP401 3.5 48.5 1.0
PA A:ATP401 3.5 51.1 1.0
PG A:ATP401 3.6 56.0 1.0
O3B A:ATP401 3.8 56.1 1.0
O3A A:ATP401 3.8 51.1 1.0
NE2 A:GLN15 3.9 47.1 1.0
C05 A:5BX403 3.9 42.2 1.0
N04 A:5BX403 4.0 47.4 1.0
O5' A:ATP401 4.3 47.9 1.0
OD2 A:ASP155 4.4 56.3 1.0
NE2 A:GLN156 4.4 43.1 1.0
O1G A:ATP401 4.4 61.5 1.0
NZ A:LYS201 4.5 54.9 1.0
O3G A:ATP401 4.7 52.9 1.0
O1A A:ATP401 4.7 40.0 1.0
O1B A:ATP401 4.8 57.4 1.0

Reference:

Y.Yang, Y.Xu, Y.Yue, H.Wang, Y.Cui, M.Pan, X.Zhang, L.Zhang, H.Li, M.Xu, Y.Tang, S.Chen. Investigate Natural Product Indolmycin and the Synthetically Improved Analogue Toward Antimycobacterial Agents. Acs Chem.Biol. V. 17 39 2022.
ISSN: ESSN 1554-8937
PubMed: 34908399
DOI: 10.1021/ACSCHEMBIO.1C00394
Page generated: Wed Oct 2 20:51:36 2024

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